RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 HIST3H2BBQ8N257 126 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 ZNF283Q8N7M2 679 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 ZNF565Q8N9K5 539 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 RNASEH2CQ8TDP1 164 aaKnown RBP3.42□□□□□ -1.86
SKP1-213ENST00000524288 TSLPQ969D9 159 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 DDIT4LQ96D03 193 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 C2orf88Q9BSF0 95 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 GPR84Q9NQS5 396 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 TMEM242Q9NWH2 141 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 ANXA10Q9UJ72 324 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 MCTS1Q9ULC4 181 aaKnown RBP3.42□□□□□ -1.86
SKP1-213ENST00000524288 CBY1Q9Y3M2 126 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 NCKAP5O14513 1909 aa3.42□□□□□ -1.86
SKP1-213ENST00000524288 SHANK1Q9Y566 2161 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 TRBV24-1A0A075B6N3 115 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 RBFOX3A6NFN3 312 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 ARGFXA6NJG6 315 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 ZNF850A8MQ14 1090 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 C17orf51A8MQB3 221 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 M0R036 132 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST1H2BKO60814 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 CRTAPO75718 401 aaPredicted RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 PRB2P02812 416 aaPredicted RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 IL4P05112 153 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST1H2BJP06899 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 ZNF728P0DKX0 622 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST1H2BOP23527 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 FKBP2P26885 142 aaKnown RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 S100A2P29034 98 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST1H2BBP33778 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST1H2BDP58876 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST1H2BCP62807 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 DEFA6Q01524 100 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 ZNF616Q08AN1 781 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 ZNF816Q0VGE8 651 aaPredicted RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 ELOBQ15370 118 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 RSU1Q15404 277 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 KISS1Q15726 138 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 VAMP3Q15836 100 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST2H2BEQ16778 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 PLPPR5Q32ZL2 321 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 LUZP6Q538Z0 58 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 KHDC3LQ587J8 217 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 ACTL10Q5JWF8 245 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 TMEM42Q69YG0 159 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 MRPL52Q86TS9 123 aaKnown RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 FAM24BQ8N5W8 94 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 DEFB119Q8N690 84 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 APCDD1LQ8NCL9 501 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 PLPP5Q8NEB5 264 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 OR2Z1Q8NG97 314 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 OR51T1Q8NGJ9 327 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 Q8WTZ3 238 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST1H2BHQ93079 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 GNPNAT1Q96EK6 184 aaPredicted RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 C14orf144Q96I85 54 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 TMEM56Q96MV1 263 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 PFDN5Q99471 154 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 SPIN2AQ99865 258 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST1H2BNQ99877 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 HIST1H2BMQ99879 126 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 SPIN2BQ9BPZ2 258 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 ZNF2Q9BSG1 426 aaPredicted RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 CHCHD7Q9BUK0 85 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 PARD6GQ9BYG4 376 aaPredicted RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 ULBP2Q9BZM5 246 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 OR8D2Q9GZM6 311 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 TCEAL2Q9H3H9 227 aaPredicted RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 BANF2Q9H503 90 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 PLEKHF2Q9H8W4 249 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 LYRM2Q9NU23 88 aaPredicted RBP3.41□□□□□ -1.86
SKP1-213ENST00000524288 DOK5Q9P104 306 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 TMEM56-RWDD3S4R434 201 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 TRANK1O15050 2925 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 KIAA2026Q5HYC2 2103 aa3.41□□□□□ -1.86
SKP1-213ENST00000524288 IGLV3-12A0A075B6K2 115 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 PIGBOS1A0A0B4J2F0 54 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 IGSF23A1L1A6 192 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 LRCOL1A6NCL2 159 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 H3BQ15 152 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 SDCBPO00560 298 aaPredicted RBP3.4□□□□□ -1.87
SKP1-213ENST00000524288 CXCL1P09341 107 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 OR5AC1P0C628 307 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 SLC25A6P12236 298 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 CTSEP14091 401 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 CRYGSP22914 178 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 ATP6V0CP27449 155 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 BLVRBP30043 206 aaPredicted RBP3.4□□□□□ -1.87
SKP1-213ENST00000524288 DDTP30046 118 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 AKR1C3P42330 323 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 PSMB2P49721 201 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 PIGPP57054 158 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 SPCS3P61009 180 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 CHD3Q12873 2000 aaKnown RBP3.4□□□□□ -1.87
SKP1-213ENST00000524288 FOXF1Q12946 379 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 PRDX4Q13162 271 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 ENDOGQ14249 297 aaKnown RBP3.4□□□□□ -1.87
SKP1-213ENST00000524288 NCMAPQ5T1S8 102 aa3.4□□□□□ -1.87
SKP1-213ENST00000524288 H1FOOQ8IZA3 346 aaPredicted RBP3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms