RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 PSG1P11464 419 aa11.31□□□□□ -0.6
SYNPO-205ENST00000522122 SPCS1Q9Y6A9 102 aa11.31□□□□□ -0.6
SYNPO-205ENST00000522122 CCL19Q99731 98 aa11.31□□□□□ -0.6
SYNPO-205ENST00000522122 MRPL16Q9NX20 251 aaKnown RBP11.31□□□□□ -0.6
SYNPO-205ENST00000522122 CDKN1AP38936 164 aa11.31□□□□□ -0.6
SYNPO-205ENST00000522122 RHOGP84095 191 aa11.31□□□□□ -0.6
SYNPO-205ENST00000522122 PMS2P5A8MQ11 134 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 IGHV1-8P0DP01 117 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 MYOD1P15172 320 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 VKORC1Q9BQB6 163 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 NXT2Q9NPJ8 142 aaKnown RBP11.3□□□□□ -0.6
SYNPO-205ENST00000522122 IGHV2-26A0A0B4J1V2 119 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 WNT2P09544 360 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 FAM71F2Q6NXP2 309 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 RASL11AQ6T310 242 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 SLC25A48Q6ZT89 311 aaKnown RBP11.3□□□□□ -0.6
SYNPO-205ENST00000522122 TEX29Q8N6K0 151 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 TMEM178BH3BS89 294 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 EREGO14944 169 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 IGHV3-11P01762 117 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 LHFPL4Q7Z7J7 247 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 ALKBH7Q9BT30 221 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-205ENST00000522122 C11orf1Q9H5F2 150 aa11.3□□□□□ -0.6
SYNPO-205ENST00000522122 C5orf30Q96GV9 206 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 TRGV9Q99603 122 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 H3BUT2 72 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 IGHG3P01860 377 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 TCRAP04437 139 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 ST20Q9HBF5 79 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 POLR3KQ9Y2Y1 108 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-205ENST00000522122 TDGF1P3P51864 188 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 CACNG7P62955 275 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 MEIG1Q5JSS6 88 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 C7orf69Q9H7B7 122 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 BEX4Q9NWD9 120 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-205ENST00000522122 CRIM1Q9NZV1 1036 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 H0YJW9 148 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 COPS9Q8WXC6 57 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 FAM168AQ92567 244 aa11.29□□□□□ -0.6
SYNPO-205ENST00000522122 A0A1B0GWJ7 208 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 NPIPB5A8MRT5 1133 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 CDPF1Q6NVV7 123 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 EXOC3-AS1Q8N2X6 119 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 IFI27L1Q96BM0 104 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 SLC25A39Q9BZJ4 359 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-205ENST00000522122 NDUFA3O95167 84 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 PAX1P15863 534 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 PPIFP30405 207 aaKnown RBP11.28□□□□□ -0.6
SYNPO-205ENST00000522122 ZNF672Q499Z4 452 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-205ENST00000522122 OR4X2Q8NGF9 303 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 SCRT1Q9BWW7 348 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 TNFRSF18Q9Y5U5 241 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 A0A1B0GWB2 263 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 MBD3L4A6NDZ8 208 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-205ENST00000522122 MBD3L3A6NE82 208 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-205ENST00000522122 MBD3L5A6NJ08 208 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-205ENST00000522122 MBD3L2Q8NHZ7 208 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-205ENST00000522122 TMEM190Q8WZ59 177 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 RNASE4P34096 147 aaKnown RBP11.28□□□□□ -0.6
SYNPO-205ENST00000522122 GAFA1Q96PS6 74 aa11.28□□□□□ -0.6
SYNPO-205ENST00000522122 IGHV1-3A0A0C4DH29 117 aa11.27□□□□□ -0.6
SYNPO-205ENST00000522122 A6NNC1 897 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 FNDC10F2Z333 226 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 THBDP07204 575 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 NPFFO15130 113 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 LMO1P25800 156 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 RNF5Q99942 180 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 ZNF503-AS2A6NEH8 195 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 F2Z2F3 143 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 APOMO95445 188 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 RNASE2P10153 161 aaKnown RBP11.27□□□□□ -0.61
SYNPO-205ENST00000522122 CD33P20138 364 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 SUMO2P61956 95 aaKnown RBP11.27□□□□□ -0.61
SYNPO-205ENST00000522122 FBLN7Q53RD9 439 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 KIR3DL3Q8N743 410 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 NUP35Q8NFH5 326 aa11.27□□□□□ -0.61
SYNPO-205ENST00000522122 DLEU1O43261 78 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 ERVK11-1P61568 191 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 SAMD13Q5VXD3 122 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 DPM2O94777 84 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 C3orf79P0CE67 100 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 SRSF1Q07955 248 aaKnown RBP eCLIP11.26□□□□□ -0.61
SYNPO-205ENST00000522122 MLANAQ16655 118 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 TRAV21A0A0B4J279 112 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 FAM181BA6NEQ2 426 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 MS4A6AQ9H2W1 248 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 ITGB1BP1O14713 200 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 CRIP3Q6Q6R5 217 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 FAM169BQ8N8A8 192 aa11.26□□□□□ -0.61
SYNPO-205ENST00000522122 IGKV1-16P04430 117 aa11.25□□□□□ -0.61
SYNPO-205ENST00000522122 Q0VG73 95 aa11.25□□□□□ -0.61
SYNPO-205ENST00000522122 WDR86Q86TI4 376 aa11.25□□□□□ -0.61
SYNPO-205ENST00000522122 NHP2Q9NX24 153 aaKnown RBP11.25□□□□□ -0.61
SYNPO-205ENST00000522122 JKAMPQ9P055 326 aa11.25□□□□□ -0.61
SYNPO-205ENST00000522122 C20orf144Q9BQM9 153 aa11.25□□□□□ -0.61
SYNPO-205ENST00000522122 PSMB11A5LHX3 300 aa11.25□□□□□ -0.61
SYNPO-205ENST00000522122 LCN12Q6JVE5 192 aa11.25□□□□□ -0.61
SYNPO-205ENST00000522122 ORAOV1Q8WV07 137 aa11.25□□□□□ -0.61
SYNPO-205ENST00000522122 NUP210LQ5VU65 1888 aa11.25□□□□□ -0.61
SYNPO-205ENST00000522122 PRB4P10163 310 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms