RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 ADMP35318 185 aa12.41□□□□□ -0.42
NUP54-214ENST00000514307 ARL3P36405 182 aa12.41□□□□□ -0.42
NUP54-214ENST00000514307 SRSF3P84103 164 aaKnown RBP12.41□□□□□ -0.42
NUP54-214ENST00000514307 ICAM4Q14773 271 aa12.41□□□□□ -0.42
NUP54-214ENST00000514307 CSPG4Q6UVK1 2322 aa12.41□□□□□ -0.42
NUP54-214ENST00000514307 OR5AU1Q8NGC0 362 aa12.41□□□□□ -0.42
NUP54-214ENST00000514307 SEC11CQ9BY50 192 aa12.41□□□□□ -0.42
NUP54-214ENST00000514307 SLC25A39Q9BZJ4 359 aaPredicted RBP12.41□□□□□ -0.42
NUP54-214ENST00000514307 TMEM231Q9H6L2 316 aa12.41□□□□□ -0.42
NUP54-214ENST00000514307 RABAC1Q9UI14 185 aa12.41□□□□□ -0.42
NUP54-214ENST00000514307 PUS1Q9Y606 427 aaKnown RBP eCLIP12.41□□□□□ -0.42
NUP54-214ENST00000514307 ARL2-SNX15V9GYD0 113 aa12.41□□□□□ -0.42
NUP54-214ENST00000514307 TRAV5A0A0B4J249 113 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 GGCTO75223 188 aaKnown RBP12.4□□□□□ -0.42
NUP54-214ENST00000514307 MEF2BQ02080 365 aaPredicted RBP12.4□□□□□ -0.42
NUP54-214ENST00000514307 CST9LP1Q5W188 147 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 TOMM20LQ6UXN7 152 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 RNF152Q8N8N0 203 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 CCDC140Q96MF4 163 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 UHRF2Q96PU4 802 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 SHANK2-AS3Q9BTD1 123 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 C16orf95Q9H693 158 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 SERTAD4Q9NUC0 356 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 TMEM14CQ9P0S9 112 aa12.4□□□□□ -0.42
NUP54-214ENST00000514307 PEF1Q9UBV8 284 aaKnown RBP12.4□□□□□ -0.42
NUP54-214ENST00000514307 PDE6DO43924 150 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 EIF3GO75821 320 aaKnown RBP eCLIP12.39□□□□□ -0.43
NUP54-214ENST00000514307 SFTA3P0C7M3 94 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 NPPCP23582 126 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 DEFA5Q01523 94 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 TMEM95Q3KNT9 176 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 FAM106AQ4KMX7 169 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 SOHLH1Q5JUK2 328 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 Q6ZSV7 163 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 BPIFA4PQ86YQ2 179 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 TMEM190Q8WZ59 177 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 FAM167A-AS1Q96KT0 104 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 UBE2E2Q96LR5 201 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 SLC25A2Q9BXI2 301 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 ESM1Q9NQ30 184 aa12.39□□□□□ -0.43
NUP54-214ENST00000514307 ZNF469Q96JG9 3925 aaPredicted RBP12.39□□□□□ -0.43
NUP54-214ENST00000514307 FLNAP21333 2647 aaKnown RBP12.38□□□□□ -0.43
NUP54-214ENST00000514307 A0A1W2PRE2 83 aa12.38□□□□□ -0.43
NUP54-214ENST00000514307 F6UZH7 168 aa12.38□□□□□ -0.43
NUP54-214ENST00000514307 NDUFA4O00483 81 aa12.38□□□□□ -0.43
NUP54-214ENST00000514307 SRP19P09132 144 aaKnown RBP12.38□□□□□ -0.43
NUP54-214ENST00000514307 KLHDC1Q8N7A1 406 aa12.38□□□□□ -0.43
NUP54-214ENST00000514307 WFDC12Q8WWY7 111 aa12.38□□□□□ -0.43
NUP54-214ENST00000514307 ACANP16112 2415 aa12.38□□□□□ -0.43
NUP54-214ENST00000514307 NAV3Q8IVL0 2385 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 ZNF98A6NK75 572 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 INAFM1C9JVW0 142 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 C11orf94C9JXX5 98 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 TMEM250H0YL14 139 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 TCF21O43680 179 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 CRLF1O75462 422 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 IGHV3-11P01762 117 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 NBEAP1P0C6P0 100 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 HIST1H1EP10412 219 aaKnown RBP12.37□□□□□ -0.43
NUP54-214ENST00000514307 UBE2L3P68036 154 aaKnown RBP12.37□□□□□ -0.43
NUP54-214ENST00000514307 FAM74A3Q4VXF1 159 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 OR4F17Q8NGA8 305 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 OR4F5Q8NH21 305 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 LINC00052Q96N35 136 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 GPR82Q96P67 336 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 OR4F4Q96R69 305 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 METTL26Q96S19 204 aa12.37□□□□□ -0.43
NUP54-214ENST00000514307 C9JQL5 133 aa12.36□□□□□ -0.43
NUP54-214ENST00000514307 H3BRN7 92 aa12.36□□□□□ -0.43
NUP54-214ENST00000514307 NDUFA7O95182 113 aa12.36□□□□□ -0.43
NUP54-214ENST00000514307 APOC3P02656 99 aa12.36□□□□□ -0.43
NUP54-214ENST00000514307 RPL7P18124 248 aaKnown RBP12.36□□□□□ -0.43
NUP54-214ENST00000514307 UBE2G2P60604 165 aa12.36□□□□□ -0.43
NUP54-214ENST00000514307 KIAA0141Q14154 515 aaPredicted RBP12.36□□□□□ -0.43
NUP54-214ENST00000514307 USF2Q15853 346 aaPredicted RBP12.36□□□□□ -0.43
NUP54-214ENST00000514307 C10orf91Q5T1B1 145 aa12.36□□□□□ -0.43
NUP54-214ENST00000514307 C1orf194Q5T5A4 169 aa12.36□□□□□ -0.43
NUP54-214ENST00000514307 VPS13CQ709C8 3753 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 FAM74A7A6NL05 159 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 PPP5D1E7EU14 171 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 RPLP1P05386 114 aaKnown RBP12.35□□□□□ -0.43
NUP54-214ENST00000514307 OR10J4P0C629 311 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 CDX1P47902 265 aaPredicted RBP12.35□□□□□ -0.43
NUP54-214ENST00000514307 MORN5Q5VZ52 161 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 Q71RC1 249 aaPredicted RBP12.35□□□□□ -0.43
NUP54-214ENST00000514307 GPHB5Q86YW7 130 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 OR8I2Q8N0Y5 310 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 SVBPQ8N300 66 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 MYOZ3Q8TDC0 251 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 FXYD5Q96DB9 178 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 ZNF503Q96F45 646 aa12.35□□□□□ -0.43
NUP54-214ENST00000514307 CARHSP1Q9Y2V2 147 aaKnown RBP12.35□□□□□ -0.43
NUP54-214ENST00000514307 IGHV3-35A0A0C4DH35 117 aa12.34□□□□□ -0.43
NUP54-214ENST00000514307 A0A1W2PS18 150 aa12.34□□□□□ -0.43
NUP54-214ENST00000514307 LGALS1P09382 135 aaKnown RBP12.34□□□□□ -0.43
NUP54-214ENST00000514307 CEBPGP53567 150 aa12.34□□□□□ -0.43
NUP54-214ENST00000514307 CD81P60033 236 aa12.34□□□□□ -0.43
NUP54-214ENST00000514307 RPUSD4Q96CM3 377 aaKnown RBP12.34□□□□□ -0.43
NUP54-214ENST00000514307 GRAMD2BQ96HH9 432 aa12.34□□□□□ -0.43
NUP54-214ENST00000514307 TCEAL7Q9BRU2 100 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms