RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 COL4A4P53420 1690 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 IGHV3OR16-12A0A075B7B8 117 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 TRAV1-1A0A0B4J248 108 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 H3BMG7 143 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 GATA2P23769 480 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 RPL39P5Q59GN2 51 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 CDCP2Q5VXM1 449 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 LINC01551Q86U37 167 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 FAM89BQ8N5H3 189 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 Q8NFD4 153 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 GBF1Q92538 1859 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 IGHV3-64A0A075B6Q5 118 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 TRAV41A0A0B4J266 112 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 hCG_38984A0A1B0GV85 526 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 PAX4O43316 350 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 NPPCP23582 126 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 HAMPP81172 84 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 ASCL2Q99929 193 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 SPATA25Q9BR10 227 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 IFI27L2Q9H2X8 130 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 DPH3P1Q9H4G8 78 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 VWA8A3KMH1 1905 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 IGKV1D-43A0A0B4J1Z2 117 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 IGHV2-70DA0A0C4DH43 119 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 CCL25O15444 150 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 LCNL1Q6ZST4 164 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 OTORQ9NRC9 128 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 TRPM7Q96QT4 1865 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 IQCF6A8MYZ5 107 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 RPL32P62910 135 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 Q0VG73 95 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 C8orf46Q8TAG6 207 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 Q9H3A6 140 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 BPTFQ12830 3046 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 CD28P10747 220 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 SRD5A1P18405 259 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 NBL1P41271 181 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 IDI2-AS1Q9NZ38 188 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 IGHV1-45A0A0A0MS14 117 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 SLC25A45Q8N413 288 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 KLF14Q8TD94 323 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 JPT1Q9UK76 154 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 U3KQE9 123 aa7.26□□□□□ -1.25
LIMCH1-218ENST00000513024 IGHV2-26A0A0B4J1V2 119 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 C17orf98A8MV24 154 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 IGHV2-5P01817 119 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 DEFB121Q5J5C9 76 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 BVES-AS1Q5T3Y7 98 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 NEGR1Q7Z3B1 354 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 SAXO1Q8IYX7 474 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 SLC22A18ASQ8N1D0 253 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 ZNRF1Q8ND25 227 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 OR13A1Q8NGR1 328 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 ANAPC10Q9UM13 185 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 PKIGQ9Y2B9 76 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 RNF114Q9Y508 228 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 NBASA2RRP1 2371 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 LOC102723996A0A087X1L8 192 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 TEX48A0A1B0GUV7 120 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 PRR32B1ATL7 298 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 CDKN1AP38936 164 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 CACNG8Q8WXS5 425 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 PRADC1Q9BSG0 188 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 SMIM10L1P0DMW3 83 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 TCF15Q12870 199 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 FDCSPQ8NFU4 85 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 SMIM10Q96HG1 83 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 TMEM74BQ9NUR3 256 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 C12orf77C9JDV5 145 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 F2Z2F3 143 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 ATOX1O00244 68 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 CDK2AP2O75956 126 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 CMC4P56277 68 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 SRXN1Q9BYN0 137 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 FBXL7Q9UJT9 491 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 S4R3C0 116 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 CACNA1HO95180 2353 aa7.25□□□□□ -1.25
LIMCH1-218ENST00000513024 IGHV3-49A0A0A0MS15 119 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 OR11H6Q8NGC7 330 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 KIF26BQ2KJY2 2108 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 PLXNA3P51805 1871 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 TRAV13-1A0A0B4J241 112 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 IGHV1-24A0A0C4DH33 117 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 IGKV3-20P01619 116 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 CD55P08174 381 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 SLC25A16P16260 332 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 SUMO4Q6EEV6 95 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 UBE2DNLQ8IWF7 75 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 IGHG4P01861 327 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 AGMATQ9BSE5 352 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 FOXA2Q9Y261 457 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 D6R8Y8 96 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 SP5Q6BEB4 398 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 TM2D1Q9BX74 207 aa7.24□□□□□ -1.25
LIMCH1-218ENST00000513024 LEPROTO15243 131 aa7.23□□□□□ -1.25
LIMCH1-218ENST00000513024 SNRPD3P62318 126 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-218ENST00000513024 MORN5Q5VZ52 161 aa7.23□□□□□ -1.25
LIMCH1-218ENST00000513024 HAPLN4Q86UW8 402 aa7.23□□□□□ -1.25
LIMCH1-218ENST00000513024 NTN5Q8WTR8 489 aaPredicted RBP7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms