RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PMS2P5A8MQ11 134 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 MST1P26927 711 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 LY6EQ16553 131 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 C12orf74Q32Q52 190 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 Q6ZWC4 215 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 SCN11AQ9UI33 1791 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 A0A0B4J2C4 111 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 BMPERQ8N8U9 685 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 SPXQ9BT56 116 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 LOC102723996A0A087X1L8 192 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 H3BMG7 143 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 NBL1P41271 181 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 CDCP2Q5VXM1 449 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 DEFB124Q8NES8 71 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 ATP6V0E2Q8NHE4 81 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 TIMM23O14925 209 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 LILRA1O75019 489 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 PRSS22Q9GZN4 317 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 ZNF638Q14966 1978 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 TRAV41A0A0B4J266 112 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 CFC1BP0CG36 223 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 CFC1P0CG37 223 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 IL15RAQ13261 267 aa9.22□□□□□ -0.93
LIMCH1-217ENST00000512946 PSG7Q13046 419 aa9.21□□□□□ -0.93
LIMCH1-217ENST00000512946 MST1LQ2TV78 715 aa9.21□□□□□ -0.93
LIMCH1-217ENST00000512946 Q6ZVH6 145 aa9.21□□□□□ -0.93
LIMCH1-217ENST00000512946 PPP1R32Q7Z5V6 425 aa9.21□□□□□ -0.93
LIMCH1-217ENST00000512946 TEN1Q86WV5 123 aa9.21□□□□□ -0.93
LIMCH1-217ENST00000512946 PYGO2Q9BRQ0 406 aa9.21□□□□□ -0.93
LIMCH1-217ENST00000512946 TRBV7-1A0A0A6YYK4 115 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 TIAF1O95411 115 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 CECR9P0C854 216 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 IL9P15248 144 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 MP68P56378 58 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 MORN5Q5VZ52 161 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 ZNF329Q86UD4 541 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 F5P12259 2224 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 IGKV1-9A0A0C4DH69 117 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 PLA2G2FQ9BZM2 168 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 ZNF71Q9NQZ8 489 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 C17orf100A8MU93 164 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 H0YGX0 51 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 NTN3O00634 580 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 CRLF1O75462 422 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 CTSBP07858 339 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 COX6B1P14854 86 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 PCOLCEQ15113 449 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 FAM216BQ8N7L0 139 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 C1orf159Q96HA4 380 aa9.21□□□□□ -0.94
LIMCH1-217ENST00000512946 LOC101059948A0A1B0GTJ6 334 aa9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 IGHV3-23P01764 117 aa9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 VDAC2P45880 294 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 NDUFA12Q9UI09 145 aa9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 COX6A1P12074 109 aa9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 C20orf78Q9BR46 151 aa9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 RGPD5Q99666 1765 aa9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 CELA3AP09093 270 aa9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 HEATR5BQ9P2D3 2071 aa9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 AHDC1Q5TGY3 1603 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 TOGARAM1Q9Y4F4 1720 aa9.2□□□□□ -0.94
LIMCH1-217ENST00000512946 CACNA1SQ13698 1873 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 IGKV2-40A0A087WW87 121 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 IGLV3-32A0A0A0MS00 114 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 IGKV2D-40P01614 121 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 C8orf86Q6ZUL3 223 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 NDUFB8O95169 186 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 IGHG2P01859 326 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 WNT2P09544 360 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 MINOS1Q5TGZ0 78 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 MINOS1-NBL1R4GNA1 71 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 SMIM27A0A1W2PRY6 76 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 SRRM4A7MD48 611 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 I3L3M4 83 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 USMG5Q96IX5 58 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 ZNFX1Q9P2E3 1918 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 ATP5J2P56134 94 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 C1orf53Q5VUE5 145 aa9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 C14orf178Q8N769 122 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-217ENST00000512946 TRAV13-1A0A0B4J241 112 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 hADV29S1A0JD25 119 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 IGKV1-5P01602 117 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 ORMDL1Q9P0S3 153 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 TP53TG1Q9Y2A0 90 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 V9GYY9 64 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 TOPAZ1Q8N9V7 1692 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 TAX1BP3O14907 124 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 HGFACQ04756 655 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 FOXF2Q12947 444 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 EXOC3-AS1Q8N2X6 119 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 WIPF2Q8TF74 440 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 C11orf52Q96A22 123 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 SELENOKQ9Y6D0 94 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 RGPD2P0DJD1 1756 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 IGFBPL1Q8WX77 278 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 UTRNP46939 3433 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 A0A1B0GUL6 1792 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 USP54Q70EL1 1684 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 CRYBG1Q9Y4K1 1723 aa9.18□□□□□ -0.94
LIMCH1-217ENST00000512946 PRSS47A8MTI9 375 aa9.17□□□□□ -0.94
LIMCH1-217ENST00000512946 J3QQQ9 107 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms