RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TMEM222Q9H0R3 208 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 FBXL15Q9H469 300 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ZNF442Q9H7R0 627 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 RETNQ9HD89 108 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 FGF20Q9NP95 211 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 HRASLS2Q9NWW9 162 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 WRAP73Q9P2S5 460 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 CLCF1Q9UBD9 225 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 FIS1Q9Y3D6 152 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 UBR1Q8IWV7 1749 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 MUC5BQ9HC84 5762 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 NUP205Q92621 2012 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 CCDC88CQ9P219 2028 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SIPA1L3O60292 1781 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 DENND4CQ5VZ89 1909 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 PATJQ8NI35 1801 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ALS2Q96Q42 1657 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 GBF1Q92538 1859 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 MON2Q7Z3U7 1717 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 TRAV9-1A0A075B6T8 112 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 IGKV3D-11A0A0A0MRZ8 115 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 TMED7-TICAM2A0A0A6YYA0 188 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 TRAV14DV4A0A0A6YYC5 116 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 LOC100131303A0A0U1RQF7 123 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 A0A0U1RQV1 116 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 A0A1W2PPM0 123 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 TCRBV9S1A1TA0A576 114 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 DPRXA6NFQ7 191 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR4C45A6NMZ5 311 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 RIIAD1A6NNX1 92 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 C9JQL5 133 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 H3BMG7 143 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 CCDC179H3BU77 68 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 M0R2P5 195 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ISLRO14498 428 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OVOL1O14753 267 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 UQCRQO14949 82 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 KLF7O75840 302 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 LSM8O95777 96 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 NAPSAO96009 420 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SOD1P00441 154 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 IGHG2P01859 326 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 IGHMP01871 453 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 HLA-DPB1P04440 258 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR5AL1P0C617 328 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 P0DMU3 169 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 FAM231AP0DMU4 169 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 FAM231CP0DMU5 169 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 PSMB8P28062 276 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OPRK1P41145 380 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 CCR2P41597 374 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 P2RX1P51575 399 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 C1QTNF8P60827 252 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 TMEM258P61165 79 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 RND3P61587 244 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SSBP1Q04837 148 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 FOXF1Q12946 379 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 PMAIP1Q13794 54 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 LAGE3Q14657 143 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 CEACAM16Q2WEN9 425 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 MPV17L2Q567V2 206 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 DMRTC1Q5HYR2 192 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 IBA57Q5T440 356 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 ZNF322Q6U7Q0 402 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 LCN15Q6UWW0 184 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 DPPA3Q6W0C5 159 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SSX8Q7RTT4 187 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ZNF101Q8IZC7 436 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 VKORC1L1Q8N0U8 176 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ATOH7Q8N100 152 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 GAPTQ8N292 157 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SIGLECL1Q8N7X8 197 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 NUP35Q8NFH5 326 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR4X2Q8NGF9 303 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR5D14Q8NGL3 314 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR10AG1Q8NH19 301 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR52P1PQ8NH57 321 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR51H1Q8NH63 302 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 CMTM2Q8TAZ6 248 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 C18orf32Q8TCD1 76 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 GEMIN6Q8WXD5 167 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 CHCHD10Q8WYQ3 142 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 FGF14Q92915 247 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 UBE2E3Q969T4 207 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SFXN3Q9BWM7 321 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 POLR2J2Q9GZM3 115 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 IMUPQ9GZP8 106 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 COMMD5Q9GZQ3 224 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 EIF5A2Q9GZV4 153 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 RNASE7Q9H1E1 156 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 ABRACLQ9P1F3 81 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 MTFP1Q9UDX5 166 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ZNF257Q9Y2Q1 563 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 LSM2Q9Y333 95 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 KLF12Q9Y4X4 402 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 INSIG2Q9Y5U4 225 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SPCS1Q9Y6A9 102 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 KMT2BQ9UMN6 2715 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 ALPK3Q96L96 1907 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 COL14A1Q05707 1796 aaKnown RBP1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms