RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PPBPP02775 128 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 DLX1P56177 255 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 PSG3Q16557 428 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 MUC21A0A0G2JKD1 596 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 MUC21A0A140T8X8 626 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 A1L4Q6 167 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 FAM181BA6NEQ2 426 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 GAGE10A6NGK3 116 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 PRTN3P24158 256 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 Q0VG73 95 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 MUC21Q5SSG8 566 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 MOB4Q9Y3A3 225 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 CEP192Q8TEP8 1941 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 K7ERU9 68 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 GZMBP10144 247 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 WT1P19544 449 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 PRR30Q53SZ7 412 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 C11orf52Q96A22 123 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 LAMTOR2Q9Y2Q5 125 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 F2Z2F3 143 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 RPL24P83731 157 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 SMAGPQ0VAQ4 97 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 C11orf1Q9H5F2 150 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 KAAG1Q9UBP8 84 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 MMP23AO75900 390 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 FABP2P12104 132 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 C15orf32Q32M92 178 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 SHANK2-AS3Q9BTD1 123 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 PRO3102Q9H379 93 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 CACNG7P62955 275 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 Q86TA4 180 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 ZNF502Q8TBZ5 544 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 DKK4Q9UBT3 224 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 IGLV2-14P01704 120 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 KIR2DL4Q99706 377 aa8.69□□□□□ -1.02
LIMCH1-205ENST00000503057 HBDP02042 147 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 PRR20EP86478 221 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 PRR20CP86479 221 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 PRR20DP86480 221 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 PRR20BP86481 221 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 PRR20AP86496 221 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 LY6DQ14210 128 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 ERASQ7Z444 233 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 ZNF492Q9P255 531 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 TRAV41A0A0B4J266 112 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 PSMB2P49721 201 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 COTL1Q14019 142 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 GCSHP23434 173 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 PAX8Q06710 450 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 THAP8Q8NA92 274 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 GOLGB1Q14789 3259 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 M0R381 172 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 PDE6HQ13956 83 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 C18orf15Q96N68 181 aa8.68□□□□□ -1.02
LIMCH1-205ENST00000503057 IGKV2-40A0A087WW87 121 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 TRBV7-1A0A0A6YYK4 115 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 IGKV2D-40P01614 121 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 YPEL3P61236 119 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 SIGLEC15Q6ZMC9 328 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 LINC00469Q8N7U9 141 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 DUX5Q96PT3 197 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 NXT2Q9NPJ8 142 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 GGTLC3B5MD39 225 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 WT1-ASQ06250 92 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 MRPL52Q86TS9 123 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 RAX2Q96IS3 184 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 PEF1Q9UBV8 284 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 SRRM4A7MD48 611 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 CIDEAO60543 219 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 RNF224P0DH78 156 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 CNTFRP26992 372 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 CT83Q5H943 113 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 TMEM75Q8N9X5 138 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 OR1N2Q8NGR9 330 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 ST6GALNAC6Q969X2 333 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 HIST1H4GQ99525 98 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 KLF2Q9Y5W3 355 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 V9GYV3 84 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 NCOR1O75376 2440 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 NPIPB6E9PJ23 425 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 LEPP41159 167 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 NBL1P41271 181 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 KLF17Q5JT82 389 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 RNASE4P34096 147 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 RPL15P61313 204 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 ZNF56Q15929 161 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 FAM231DQ6ZW35 169 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 LINC00479Q96M42 142 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 ST20Q9HBF5 79 aa8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 LSM4Q9Y4Z0 139 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-205ENST00000503057 KLK15Q9H2R5 256 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 TRAV21A0A0B4J279 112 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 TRAV40A0A0B4J280 105 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 FAM231BA6NCW3 169 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 M0R3E3 92 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 OVOL1O14753 267 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 ZNF562Q6V9R5 426 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 ZNF664Q8N3J9 261 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 TMEM160Q9NX00 188 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 SMIM27A0A1W2PRY6 76 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms