RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PTHLHP12272 177 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 RPA2P15927 270 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 GATA1P15976 413 aaPredicted RBP2.78□□□□□ -1.96
USP54-217ENST00000498213 GNRHRP30968 328 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 S100A7P31151 101 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 NPBWR1P48145 328 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 MFAP2P55001 183 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 PAX9P55771 341 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 XGP55808 180 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 ATP5IP56385 69 aaPredicted RBP2.78□□□□□ -1.96
USP54-217ENST00000498213 OR2B8PP59922 312 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 PJVKQ0ZLH3 352 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 EIF4EBP1Q13541 118 aaPredicted RBP2.78□□□□□ -1.96
USP54-217ENST00000498213 C2orf76Q3KRA6 126 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 OR10K2Q6IF99 312 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 BTNL8Q6UX41 500 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 CLEC19AQ6UXS0 136 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 LINC00299Q6ZSB3 139 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 CMTM1Q8IZ96 169 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 POM121L12Q8N7R1 296 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 SAMD12Q8N8I0 201 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 DRAXINQ8NBI3 349 aaPredicted RBP2.78□□□□□ -1.96
USP54-217ENST00000498213 OR1L8Q8NGR8 309 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 UBALD1Q8TB05 177 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 GIMAP1Q8WWP7 306 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 S100ZQ8WXG8 99 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 AP3S1Q92572 193 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 ABHD1Q96SE0 405 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 DIABLOQ9NR28 239 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 C21orf62Q9NYP8 219 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 EXTL2Q9UBQ6 330 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 ANXA10Q9UJ72 324 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 SPATA2Q9UM82 520 aa2.78□□□□□ -1.96
USP54-217ENST00000498213 F11RQ9Y624 299 aaKnown RBP2.78□□□□□ -1.96
USP54-217ENST00000498213 TRAV14DV4A0A0A6YYC5 116 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 A0A0A6YYD4 124 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 IGHV7-4-1A0A0J9YVY3 117 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 IGLC7A0M8Q6 106 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 HELTA6NFD8 242 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 FABP12A6NFH5 140 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 MFSD2BA6NFX1 497 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 FAM25AB3EWG3 89 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 FAM25CB3EWG5 89 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 FAM25GB3EWG6 89 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 UPK2O00526 184 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 PLA2G10O15496 165 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 GSTZ1O43708 216 aaPredicted RBP2.77□□□□□ -1.97
USP54-217ENST00000498213 SNAPC5O75971 98 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 TRAPPC2P0DI81 140 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 TRAPPC2BP0DI82 140 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 IL7P13232 177 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 S100A5P33763 92 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 PPP5CP53041 499 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 SUB1P53999 127 aaKnown RBP eCLIP2.77□□□□□ -1.97
USP54-217ENST00000498213 TAS2R46P59540 309 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 B2MP61769 119 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 DEFB135Q30KP9 77 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 LELP1Q5T871 98 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 C16orf54Q6UWD8 224 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 ZNF767PQ75MW2 155 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 OR11H2Q8NH07 326 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 CASTOR1Q8WTX7 329 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 DIRAS2Q96HU8 199 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 NDUFAF3Q9BU61 184 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 PARP12Q9H0J9 701 aaKnown RBP2.77□□□□□ -1.97
USP54-217ENST00000498213 VSIRQ9H7M9 311 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 AUNIPQ9H7T9 357 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 NDUFA4L2Q9NRX3 87 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 SMPXQ9UHP9 88 aa2.77□□□□□ -1.97
USP54-217ENST00000498213 ELF5Q9UKW6 265 aaPredicted RBP2.77□□□□□ -1.97
USP54-217ENST00000498213 LINC00854A0A1B0GVQ3 168 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 PPP5D1E7EU14 171 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 CHEK1O14757 476 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 APOA1P02647 267 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 CD74P04233 296 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 CTSGP08311 255 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 F2RP25116 425 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 GPR183P32249 361 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 BTCP35070 178 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 FUSP35637 526 aaKnown RBP eCLIP2.76□□□□□ -1.97
USP54-217ENST00000498213 TAS2R20P59543 309 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 GNG2P59768 71 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 SNRPD3P62318 126 aaKnown RBP2.76□□□□□ -1.97
USP54-217ENST00000498213 HAMPP81172 84 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 ERHP84090 104 aaKnown RBP2.76□□□□□ -1.97
USP54-217ENST00000498213 IL18Q14116 193 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 PYDC2Q56P42 97 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 IGSF11Q5DX21 431 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 UBE2NLQ5JXB2 153 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 SPANXN2Q5MJ10 180 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 DHRS11Q6UWP2 260 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 UNQ9165/PRO28630Q6UXU0 137 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 ZNF600Q6ZNG1 722 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 Q6ZR54 194 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 KRTAP5-2Q701N4 177 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 STHQ8IWL8 128 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 C15orf53Q8NAA6 179 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 TCTEX1D2Q8WW35 142 aa2.76□□□□□ -1.97
USP54-217ENST00000498213 ZNF486Q96H40 463 aaPredicted RBP2.76□□□□□ -1.97
USP54-217ENST00000498213 CCDC32Q9BV29 185 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms