RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 FAM219AQ8IW50 185 aa11.72□□□□□ -0.53
VIM-208ENST00000497849 TCTE3Q8IZS6 198 aa11.72□□□□□ -0.53
VIM-208ENST00000497849 ASB13Q8WXK3 278 aa11.72□□□□□ -0.53
VIM-208ENST00000497849 FAM210BQ96KR6 192 aa11.72□□□□□ -0.53
VIM-208ENST00000497849 PDCD10Q9BUL8 212 aa11.72□□□□□ -0.53
VIM-208ENST00000497849 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.72□□□□□ -0.53
VIM-208ENST00000497849 MYCBP2O75592 4640 aa11.71□□□□□ -0.53
VIM-208ENST00000497849 I3L2K1 104 aa11.71□□□□□ -0.53
VIM-208ENST00000497849 H2BFSP57053 126 aa11.71□□□□□ -0.53
VIM-208ENST00000497849 ACTL10Q5JWF8 245 aa11.71□□□□□ -0.53
VIM-208ENST00000497849 GINS3Q9BRX5 216 aa11.71□□□□□ -0.53
VIM-208ENST00000497849 FKBP11Q9NYL4 201 aa11.71□□□□□ -0.53
VIM-208ENST00000497849 TMED3Q9Y3Q3 217 aa11.71□□□□□ -0.53
VIM-208ENST00000497849 IGHV3-48P01763 117 aa11.7□□□□□ -0.54
VIM-208ENST00000497849 MFAP4P55083 255 aa11.7□□□□□ -0.54
VIM-208ENST00000497849 SMCO1Q147U7 214 aa11.7□□□□□ -0.54
VIM-208ENST00000497849 OR1S1Q8NH92 325 aa11.7□□□□□ -0.54
VIM-208ENST00000497849 GRAMD2BQ96HH9 432 aa11.7□□□□□ -0.54
VIM-208ENST00000497849 C2orf50Q96LR7 162 aa11.7□□□□□ -0.54
VIM-208ENST00000497849 TXN2Q99757 166 aa11.7□□□□□ -0.54
VIM-208ENST00000497849 ZFAND3Q9H8U3 227 aa11.7□□□□□ -0.54
VIM-208ENST00000497849 A0A1B0GU03 582 aa11.69□□□□□ -0.54
VIM-208ENST00000497849 HNRNPCP07910 306 aaKnown RBP eCLIP11.69□□□□□ -0.54
VIM-208ENST00000497849 ZNF688P0C7X2 276 aa11.69□□□□□ -0.54
VIM-208ENST00000497849 CYCSP99999 105 aaKnown RBP11.69□□□□□ -0.54
VIM-208ENST00000497849 IAH1Q2TAA2 248 aaPredicted RBP11.69□□□□□ -0.54
VIM-208ENST00000497849 OR1P1Q8NH06 330 aa11.69□□□□□ -0.54
VIM-208ENST00000497849 PITX3O75364 302 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 SPART-AS1P0CW21 52 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 PRCDQ00LT1 54 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 STXBP6Q8NFX7 210 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 OR2T35Q8NGX2 323 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 DCANP1Q8TF63 244 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 MISP3Q96FF7 219 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 NMES1Q9C002 83 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 MAGT1Q9H0U3 335 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 RBKSQ9H477 322 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 GSKIPQ9P0R6 139 aa11.68□□□□□ -0.54
VIM-208ENST00000497849 CEBPZOSA8MTT3 80 aa11.67□□□□□ -0.54
VIM-208ENST00000497849 SMLR1H3BR10 107 aa11.67□□□□□ -0.54
VIM-208ENST00000497849 GNG7O60262 68 aa11.67□□□□□ -0.54
VIM-208ENST00000497849 MT-CO2P00403 227 aa11.67□□□□□ -0.54
VIM-208ENST00000497849 SPCS3P61009 180 aa11.67□□□□□ -0.54
VIM-208ENST00000497849 ZFP69Q49AA0 526 aa11.67□□□□□ -0.54
VIM-208ENST00000497849 AARDQ4LEZ3 155 aa11.67□□□□□ -0.54
VIM-208ENST00000497849 SPATA12Q7Z6I5 190 aa11.67□□□□□ -0.54
VIM-208ENST00000497849 C6orf223Q8N319 242 aa11.67□□□□□ -0.54
VIM-208ENST00000497849 ZBTB8BQ8NAP8 495 aaPredicted RBP11.67□□□□□ -0.54
VIM-208ENST00000497849 PUS1Q9Y606 427 aaKnown RBP eCLIP11.67□□□□□ -0.54
VIM-208ENST00000497849 BOLA2-SMG1P6H3BVE0 249 aa11.66□□□□□ -0.54
VIM-208ENST00000497849 C1QBP02746 253 aa11.66□□□□□ -0.54
VIM-208ENST00000497849 HOXA1P49639 335 aaPredicted RBP11.66□□□□□ -0.54
VIM-208ENST00000497849 EMP1P54849 157 aa11.66□□□□□ -0.54
VIM-208ENST00000497849 FGL1Q08830 312 aa11.66□□□□□ -0.54
VIM-208ENST00000497849 OR52E5Q8NH55 327 aa11.66□□□□□ -0.54
VIM-208ENST00000497849 RAB40CQ96S21 281 aa11.66□□□□□ -0.54
VIM-208ENST00000497849 XCL2Q9UBD3 114 aa11.66□□□□□ -0.54
VIM-208ENST00000497849 NBDYA0A0U1RRE5 68 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 EPM2AB3EWF7 344 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 INAFM2P0DMQ5 153 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 IAPPP10997 89 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 SLC25A6P12236 298 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 ZNF705AQ6ZN79 300 aaPredicted RBP11.65□□□□□ -0.54
VIM-208ENST00000497849 OR4D5Q8NGN0 318 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 NEU1Q99519 415 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 ENY2Q9NPA8 101 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 DKK2Q9UBU2 259 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 HSPB7Q9UBY9 170 aa11.65□□□□□ -0.54
VIM-208ENST00000497849 SCGB1D2O95969 90 aa11.64□□□□□ -0.55
VIM-208ENST00000497849 EIF2B2P49770 351 aaKnown RBP11.64□□□□□ -0.55
VIM-208ENST00000497849 FAM3BP58499 235 aaPredicted RBP11.64□□□□□ -0.55
VIM-208ENST00000497849 POLR2GP62487 172 aaKnown RBP eCLIP11.64□□□□□ -0.55
VIM-208ENST00000497849 ERHP84090 104 aaKnown RBP11.64□□□□□ -0.55
VIM-208ENST00000497849 IL15RAQ13261 267 aa11.64□□□□□ -0.55
VIM-208ENST00000497849 TMEM88Q6PEY1 159 aa11.64□□□□□ -0.55
VIM-208ENST00000497849 ZNF600Q6ZNG1 722 aa11.64□□□□□ -0.55
VIM-208ENST00000497849 NOXA1Q86UR1 476 aa11.64□□□□□ -0.55
VIM-208ENST00000497849 PPP1R1CQ8WVI7 109 aa11.64□□□□□ -0.55
VIM-208ENST00000497849 C1QTNF4Q9BXJ3 329 aa11.64□□□□□ -0.55
VIM-208ENST00000497849 TMEM231Q9H6L2 316 aa11.64□□□□□ -0.55
VIM-208ENST00000497849 HEYLQ9NQ87 328 aaPredicted RBP11.64□□□□□ -0.55
VIM-208ENST00000497849 ZNF705FA8MVS1 300 aaPredicted RBP11.63□□□□□ -0.55
VIM-208ENST00000497849 ZNF705DP0CH99 300 aaPredicted RBP11.63□□□□□ -0.55
VIM-208ENST00000497849 ZNF705BP0CI00 300 aaPredicted RBP11.63□□□□□ -0.55
VIM-208ENST00000497849 RNASE2P10153 161 aaKnown RBP11.63□□□□□ -0.55
VIM-208ENST00000497849 HTN3P15516 51 aa11.63□□□□□ -0.55
VIM-208ENST00000497849 ID3Q02535 119 aa11.63□□□□□ -0.55
VIM-208ENST00000497849 LRRC37A5PQ49AS3 106 aa11.63□□□□□ -0.55
VIM-208ENST00000497849 Q5BKY6 102 aa11.63□□□□□ -0.55
VIM-208ENST00000497849 FAM222AQ5U5X8 452 aa11.63□□□□□ -0.55
VIM-208ENST00000497849 ZNF114Q8NC26 417 aa11.63□□□□□ -0.55
VIM-208ENST00000497849 PINX1Q96BK5 328 aaKnown RBP11.63□□□□□ -0.55
VIM-208ENST00000497849 NIPSNAP3BQ9BS92 247 aa11.63□□□□□ -0.55
VIM-208ENST00000497849 UBR4Q5T4S7 5183 aa11.63□□□□□ -0.55
VIM-208ENST00000497849 A0A1W2PS18 150 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 TMEM189A5PLL7 270 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 G3V3Q6 166 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 WRBO00258 174 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 MPC2O95563 127 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 PET100P0DJ07 73 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms