RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 NMNAT1Q9HAN9 279 aaPredicted RBP0.43□□□□□ -2.34
SCN1A-206ENST00000491429 ORMDL1Q9P0S3 153 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 NCOA1Q15788 1441 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 COL1A1P02452 1464 aaPredicted RBP0.42□□□□□ -2.34
SCN1A-206ENST00000491429 MDN1Q9NU22 5596 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 NEBP20929 6669 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 NUPR1O60356 82 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 ATP5G3P48201 142 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 CCL7P80098 99 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 LIN52Q52LA3 116 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 BCL2L15Q5TBC7 163 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 C22orf39Q6P5X5 142 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 C2orf82Q6UX34 121 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 C4orf22Q6V702 233 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 OR11H6Q8NGC7 330 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 OR5D14Q8NGL3 314 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 LINC00052Q96N35 136 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 PRAP1Q96NZ9 151 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 YPEL2Q96QA6 119 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 LINC00467Q9BRT7 94 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 PSTPIP2Q9H939 334 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 ENY2Q9NPA8 101 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 PCTPQ9UKL6 214 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 LY96Q9Y6Y9 160 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 EML5Q05BV3 1969 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 DSTQ03001 7570 aaKnown RBP0.42□□□□□ -2.34
SCN1A-206ENST00000491429 DOCK3Q8IZD9 2030 aa0.42□□□□□ -2.34
SCN1A-206ENST00000491429 SBF1O95248 1867 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 TNRC6AQ8NDV7 1962 aaKnown RBP0.41□□□□□ -2.34
SCN1A-206ENST00000491429 PLXND1Q9Y4D7 1925 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 TRBV19A0A075B6N1 114 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 TRAV10A0A0B4J240 114 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 A8MWV9 139 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 TAX1BP3O14907 124 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 HMGB3O15347 200 aaKnown RBP0.41□□□□□ -2.34
SCN1A-206ENST00000491429 ROMO1P60602 79 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 PLPP5Q8NEB5 264 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 DGCR14Q96DF8 476 aaKnown RBP0.41□□□□□ -2.34
SCN1A-206ENST00000491429 PARVBQ9HBI1 364 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 TNFSF18Q9UNG2 199 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 MCM3APO60318 1980 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 ARHGEF28Q8N1W1 1705 aaKnown RBP0.41□□□□□ -2.34
SCN1A-206ENST00000491429 PEAK1Q9H792 1746 aa0.41□□□□□ -2.34
SCN1A-206ENST00000491429 SCN3AQ9NY46 2000 aa0.4□□□□□ -2.34
SCN1A-206ENST00000491429 FMN1Q68DA7 1419 aa0.4□□□□□ -2.34
SCN1A-206ENST00000491429 STAB1Q9NY15 2570 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 SCN10AQ9Y5Y9 1956 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 FAM159BA6NKW6 160 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 B4DSR2 109 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 F8W1H4 67 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 MYL5Q02045 173 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 TAF1AQ15573 450 aaPredicted RBP0.4□□□□□ -2.35
SCN1A-206ENST00000491429 SPATA8Q6RVD6 105 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 ZNF833PQ6ZTB9 187 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 C9orf16Q9BUW7 83 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 IMUPQ9GZP8 106 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 OPTCQ9UBM4 332 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 FSIP2Q5CZC0 6907 aa0.4□□□□□ -2.35
SCN1A-206ENST00000491429 TNS3Q68CZ2 1445 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 MUC5ACP98088 5654 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 SYNE2Q8WXH0 6885 aaKnown RBP0.39□□□□□ -2.35
SCN1A-206ENST00000491429 H3BRM9 83 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 ERC2-IT1O76042 136 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 IFNA7P01567 189 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 HOXA6P31267 233 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 UBE2BP63146 152 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 EIF5AL1Q6IS14 154 aaKnown RBP0.39□□□□□ -2.35
SCN1A-206ENST00000491429 KRTAP26-1Q6PEX3 210 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 HAGHLQ6PII5 290 aaPredicted RBP0.39□□□□□ -2.35
SCN1A-206ENST00000491429 GOLT1AQ6ZVE7 132 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 S100A7AQ86SG5 101 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 TEN1Q86WV5 123 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 OR10X1Q8NGY0 326 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 Q8TAT8 98 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 GGACTQ9BVM4 153 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 NPCDR1Q9BY65 106 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 TMEM138Q9NPI0 162 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 ARL2BPQ9Y2Y0 163 aa0.39□□□□□ -2.35
SCN1A-206ENST00000491429 ARHGEF11O15085 1522 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 PHGR1C9JFL3 82 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 E7EUB6 86 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 TMEM256-PLSCR3K7ERE1 68 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 M0R233 179 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 M0R378 163 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 SERPINA1P01009 418 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 IGLV3-1P01715 115 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 DSCR4P56555 118 aaPredicted RBP0.38□□□□□ -2.35
SCN1A-206ENST00000491429 ERVS71-1P61550 626 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 CDK6Q00534 326 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 C1orf134Q5TEV5 83 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 CANT1Q8WVQ1 401 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 RAB37Q96AX2 223 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 DENND4CQ5VZ89 1909 aa0.38□□□□□ -2.35
SCN1A-206ENST00000491429 KDM6AO15550 1401 aaPredicted RBP0.38□□□□□ -2.35
SCN1A-206ENST00000491429 CNTRLQ7Z7A1 2325 aa0.37□□□□□ -2.35
SCN1A-206ENST00000491429 IGLV3-32A0A0A0MS00 114 aa0.37□□□□□ -2.35
SCN1A-206ENST00000491429 BANF1O75531 89 aa0.37□□□□□ -2.35
SCN1A-206ENST00000491429 CTXN2P0C2S0 81 aa0.37□□□□□ -2.35
SCN1A-206ENST00000491429 DYNLT3P51808 116 aa0.37□□□□□ -2.35
SCN1A-206ENST00000491429 REEP5Q00765 189 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms