RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	OR2C1	O95371	312 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	TOMM40	O96008	361 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	IGKV1-17	P01599	117 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	PRB1	P04280	392 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	REG1A	P05451	166 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	CRYBA1	P05813	215 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	FABP1	P07148	127 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	MSMB	P08118	114 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	COX6B1	P14854	86 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	HIST1H1B	P16401	226 aa	Known RBP	4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	TMEM11	P17152	192 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	RAB5A	P20339	215 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	GATA2	P23769	480 aa	Predicted RBP	4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	ATP5G3	P48201	142 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	YPEL3	P61236	119 aa	Predicted RBP	4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	ZNF90	Q03938	601 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	PLGLA	Q15195	96 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	ELOB	Q15370	118 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	C10orf113	Q5VZT2	155 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	RUSC1-AS1	Q66K80	236 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	SGMS2	Q8NHU3	365 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	FAM110D	Q8TAY7	271 aa	Predicted RBP	4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	VN1R17P	Q8TDU5	208 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	C2CD4C	Q8TF44	421 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	FXYD5	Q96DB9	178 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	PERP	Q96FX8	193 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	UHRF2	Q96PU4	802 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	IMMP2L	Q96T52	175 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	TXN2	Q99757	166 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	C20orf24	Q9BUV8	137 aa		4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	BEX4	Q9NWD9	120 aa	Predicted RBP	4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	MRPL27	Q9P0M9	148 aa	Known RBP	4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	TET2	Q6N021	2002 aa	Predicted RBP	4.34	□□□□□ -1.71
ATG4A-208	ENST00000489247	UBR5	O95071	2799 aa	Predicted RBP	4.34	□□□□□ -1.72
ATG4A-208	ENST00000489247	ZFYVE26	Q68DK2	2539 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	TRBV20OR9-2	A0A075B6H5	130 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	TRBV9	A0A0B4J1U6	114 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	WI2-2373I1.2	A0A1W2PRP0	233 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247		B4DSR2	109 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	GGTLC3	B5MD39	225 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	PPP1R2P9	O14990	202 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	HYPM	O75409	117 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	NDUFB4	O95168	129 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	CNIH1	O95406	144 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	PFN1	P07737	140 aa	Known RBP	4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	NPS	P0C0P6	89 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	OR10J4	P0C629	311 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	GP9	P14770	177 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	AKR1C3	P42330	323 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	LOXL1	Q08397	574 aa	Predicted RBP	4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	HES1	Q14469	280 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	AKIRIN2	Q53H80	203 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	MORN5	Q5VZ52	161 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	CST9LP1	Q5W188	147 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	C19orf35	Q6ZS72	473 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	C16orf82	Q7Z2V1	217 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	LINC01551	Q86U37	167 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	ARL6IP6	Q8N6S5	226 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	C5orf56	Q8N8D9	126 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	OR5AU1	Q8NGC0	362 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	OR51G1	Q8NGK1	321 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	PIFO	Q8TCI5	191 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	ISOC2	Q96AB3	205 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	SMIM12	Q96EX1	92 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	RBM14	Q96PK6	669 aa	Known RBP	4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	OR51M1	Q9H341	326 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	PRDM13	Q9H4Q3	707 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	ZNF355P	Q9NSJ1	428 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	THYN1	Q9P016	225 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	CACNA1B	Q00975	2339 aa		4.33	□□□□□ -1.72
ATG4A-208	ENST00000489247	EPG5	Q9HCE0	2579 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	TRAV9-1	A0A075B6T8	112 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	TRBV6-1	A0A0K0K1D8	114 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247		A6NDX4	124 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	C1orf196	B1AJZ1	125 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247		H3BRN7	92 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	PHOX2A	O14813	284 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	OR7C2	O60412	319 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	GGCT	O75223	188 aa	Known RBP	4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	TYMS	P04818	313 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	IGF1	P05019	195 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	PSG1	P11464	419 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	CD24	P25063	80 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	SRP14	P37108	136 aa	Known RBP	4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	CEBPG	P53567	150 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	MFAP4	P55083	255 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	TAS2R60	P59551	318 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	UBE2G2	P60604	165 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	RAB5B	P61020	215 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	RPL15	P61313	204 aa	Known RBP	4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	UBE2L3	P68036	154 aa	Known RBP	4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	FAM120AOS	Q5T036	256 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	PRSS57	Q6UWY2	283 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	C9orf139	Q6ZV77	190 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	LINC00305	Q7Z4B0	112 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	S100A7A	Q86SG5	101 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	IQCF2	Q8IXL9	164 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247	FAM24B	Q8N5W8	94 aa		4.32	□□□□□ -1.72
ATG4A-208	ENST00000489247		Q8WTZ3	238 aa		4.32	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms