RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 LY6G6FQ5SQ64 297 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 FAM90A9PA6NNJ1 464 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 SELLP14151 372 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 ANAPC10Q9UM13 185 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 IGKV1D-43A0A0B4J1Z2 117 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 MYMXA0A1B0GTQ4 84 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 NPIPB5A8MRT5 1133 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 SUMO4Q6EEV6 95 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 TMEM133Q9H2Q1 129 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 OVOL1O14753 267 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 HOXD3P31249 432 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-224ENST00000478916 LCN12Q6JVE5 192 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 TMEM256Q8N2U0 113 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 AGMATQ9BSE5 352 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 WFDC1Q9HC57 220 aa7.3□□□□□ -1.24
SYNE1-224ENST00000478916 DTX1Q86Y01 620 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 SSC4DQ8WTU2 575 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 SCRT1Q9BWW7 348 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 IGHV3OR16-8A0A075B7F1 116 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 IGHV1-18A0A0C4DH31 117 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 YPEL1O60688 119 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 NCR2O95944 276 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 FLVCR1-AS1Q8TAF5 88 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 YPEL2Q96QA6 119 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 TRBV6-7A0A0A0MS04 114 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 EFNA4P52798 201 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 TSSC4Q9Y5U2 329 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-224ENST00000478916 SVILO95425 2214 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 TRAV1-1A0A0B4J248 108 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 PPDPFLQ8WWR9 84 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 PRADC1Q9BSG0 188 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 GBF1Q92538 1859 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 GNLYP22749 145 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 F8W1H4 67 aa7.29□□□□□ -1.24
SYNE1-224ENST00000478916 VCYO14598 125 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 IGFBP3P17936 291 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-224ENST00000478916 SLC25A39Q9BZJ4 359 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-224ENST00000478916 PTPRFP10586 1907 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 ZNF318Q5VUA4 2279 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 A8MWP6 167 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 FAM231BA6NCW3 169 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 H0YIZ8 118 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 UTF1Q5T230 341 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 LINC01551Q86U37 167 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 SLC25A28Q96A46 364 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 ZNF837Q96EG3 531 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-224ENST00000478916 SAA2-SAA4A0A096LPE2 208 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 WNT2P09544 360 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 LINC00271P0C7V0 271 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 SAA2P0DJI9 122 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-224ENST00000478916 NUP35Q8NFH5 326 aa7.28□□□□□ -1.24
SYNE1-224ENST00000478916 LTBP1Q14766 1721 aa7.27□□□□□ -1.24
SYNE1-224ENST00000478916 C9orf118A6NHY6 69 aa7.27□□□□□ -1.24
SYNE1-224ENST00000478916 TET1Q8NFU7 2136 aa7.27□□□□□ -1.24
SYNE1-224ENST00000478916 PINLYPA6NC86 204 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 RAMP3O60896 148 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 ID3Q02535 119 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 FAM166AQ6J272 317 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 WBP1Q96G27 269 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 TIMM21Q9BVV7 248 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 UBL5Q9BZL1 73 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 MSRB2Q9Y3D2 182 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 LY96Q9Y6Y9 160 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 IGHV3-11P01762 117 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 PRCDQ00LT1 54 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 WDR83OSQ9Y284 106 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 LSM4Q9Y4Z0 139 aaKnown RBP7.27□□□□□ -1.25
SYNE1-224ENST00000478916 TRAV40A0A0B4J280 105 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 ZNF876PQ49A33 203 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 LYZL1Q6UWQ5 148 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 SIGLEC15Q6ZMC9 328 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 EREGO14944 169 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 CCL3L1P16619 93 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 TMEM158Q8WZ71 300 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 VSIRQ9H7M9 311 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 ZNF319Q9P2F9 582 aa7.27□□□□□ -1.25
SYNE1-224ENST00000478916 PMVKQ15126 192 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 ZNF497Q6ZNH5 498 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 NEGR1Q7Z3B1 354 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 ERCC8Q13216 396 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 C6orf226Q5I0X4 101 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 ZC2HC1BQ5TFG8 222 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 TMEM126AQ9H061 195 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 MORN2Q502X0 79 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 REG4Q9BYZ8 158 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 IGKV1D-13A0A0B4J2D9 117 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 B4DSR2 109 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 IGHV1-46P01743 117 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 IGKV1-13P0DP09 117 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 NSUN5P1Q3KNT7 163 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 IGKV2-40A0A087WW87 121 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-224ENST00000478916 IGKV2D-40P01614 121 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-224ENST00000478916 CMC4P56277 68 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-224ENST00000478916 TCTEX1D4Q5JR98 221 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 AHCTF1Q8WYP5 2266 aa7.26□□□□□ -1.25
SYNE1-224ENST00000478916 FANCMQ8IYD8 2048 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 TCF15Q12870 199 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 C17orf82Q86X59 251 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-224ENST00000478916 C1orf43Q9BWL3 253 aa7.25□□□□□ -1.25
SYNE1-224ENST00000478916 CSTL1Q9H114 145 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms