RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 KRTAP5-8O75690 187 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 LYZL6O75951 148 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 PROSCO94903 275 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 IFNA14P01570 189 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 CRHP06850 196 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 RNASE3P12724 160 aaKnown RBP1.97□□□□□ -2.09
UPF3B-203ENST00000478840 DYNLT3P51808 116 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 RHOGP84095 191 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 LTC4SQ16873 150 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 FAM24BQ8N5W8 94 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 NAA38Q9BRA0 125 aaKnown RBP1.97□□□□□ -2.09
UPF3B-203ENST00000478840 MAP1LC3BQ9GZQ8 125 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 C14orf132Q9NPU4 83 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 OR5AC2Q9NZP5 309 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 FBN1P35555 2871 aaKnown RBP1.97□□□□□ -2.09
UPF3B-203ENST00000478840 CD109Q6YHK3 1445 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 COL4A1P02462 1669 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 DOCK4Q8N1I0 1966 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 CAMSAP2Q08AD1 1489 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 TRAV3A0A0B4J244 114 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 TRAV12-1A0A0B4J245 112 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 OR1I1O60431 355 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 TIMM17BO60830 172 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 HLA-EP13747 358 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 MYL5Q02045 173 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 RNASE10Q5GAN6 216 aaKnown RBP1.96□□□□□ -2.1
UPF3B-203ENST00000478840 DCUN1D2Q6PH85 259 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 SMIM15Q7Z3B0 74 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 Q8IYB0 196 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 Q8N2B8 174 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 TEX47Q8TBZ9 253 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 ZNF418Q8TF45 676 aaPredicted RBP1.96□□□□□ -2.1
UPF3B-203ENST00000478840 SLC25A21Q9BQT8 299 aaPredicted RBP1.96□□□□□ -2.1
UPF3B-203ENST00000478840 LAMTOR3Q9UHA4 124 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 TAF1LQ8IZX4 1826 aa1.96□□□□□ -2.1
UPF3B-203ENST00000478840 ANAPC1Q9H1A4 1944 aa1.95□□□□□ -2.1
UPF3B-203ENST00000478840 MICAL3Q7RTP6 2002 aa1.95□□□□□ -2.1
UPF3B-203ENST00000478840 GADD45GO95257 159 aa1.95□□□□□ -2.1
UPF3B-203ENST00000478840 LINC00301Q8NCQ3 95 aa1.95□□□□□ -2.1
UPF3B-203ENST00000478840 ANP32BQ92688 251 aaKnown RBP1.95□□□□□ -2.1
UPF3B-203ENST00000478840 ADAT1Q9BUB4 502 aaKnown RBP1.95□□□□□ -2.1
UPF3B-203ENST00000478840 NPCDR1Q9BY65 106 aa1.95□□□□□ -2.1
UPF3B-203ENST00000478840 POPDC3Q9HBV1 291 aa1.95□□□□□ -2.1
UPF3B-203ENST00000478840 MED9Q9NWA0 146 aa1.95□□□□□ -2.1
UPF3B-203ENST00000478840 OR52A1Q9UKL2 312 aa1.95□□□□□ -2.1
UPF3B-203ENST00000478840 TRPM1Q7Z4N2 1603 aa1.95□□□□□ -2.1
UPF3B-203ENST00000478840 TRAV14DV4A0A0A6YYC5 116 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 TRAV5A0A0B4J249 113 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 H0YJX3 145 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 IFNA21P01568 189 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 C1orf140Q5VVS0 124 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 PATE2Q6UY27 113 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 C12orf29Q8N999 325 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 OR10K1Q8NGX5 313 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 SFT2D1Q8WV19 159 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 NUP210LQ5VU65 1888 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 CEP164Q9UPV0 1460 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 NUP98P52948 1817 aa1.94□□□□□ -2.1
UPF3B-203ENST00000478840 PCDH15Q96QU1 1955 aa1.93□□□□□ -2.1
UPF3B-203ENST00000478840 A0A1W2PRE2 83 aa1.93□□□□□ -2.1
UPF3B-203ENST00000478840 BRS3P32247 399 aa1.93□□□□□ -2.1
UPF3B-203ENST00000478840 PLCXD2Q0VAA5 305 aa1.93□□□□□ -2.1
UPF3B-203ENST00000478840 FKBP1CQ5VVH2 108 aa1.93□□□□□ -2.1
UPF3B-203ENST00000478840 EIF5AL1Q6IS14 154 aaKnown RBP1.93□□□□□ -2.1
UPF3B-203ENST00000478840 PHF5AQ7RTV0 110 aaKnown RBP1.93□□□□□ -2.1
UPF3B-203ENST00000478840 PPTC7Q8NI37 304 aa1.93□□□□□ -2.1
UPF3B-203ENST00000478840 BAZ2BQ9UIF8 2168 aaKnown RBP1.93□□□□□ -2.1
UPF3B-203ENST00000478840 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
UPF3B-203ENST00000478840 FREM1Q5H8C1 2179 aa1.92□□□□□ -2.1
UPF3B-203ENST00000478840 PFDN1O60925 122 aa1.92□□□□□ -2.1
UPF3B-203ENST00000478840 ROMO1P60602 79 aa1.92□□□□□ -2.1
UPF3B-203ENST00000478840 RTL8BQ17RB0 113 aa1.92□□□□□ -2.1
UPF3B-203ENST00000478840 DEFB113Q30KQ7 82 aa1.92□□□□□ -2.1
UPF3B-203ENST00000478840 UNQ6190/PRO20217Q6UXQ8 127 aa1.92□□□□□ -2.1
UPF3B-203ENST00000478840 CARD19Q96LW7 228 aa1.92□□□□□ -2.1
UPF3B-203ENST00000478840 EML6Q6ZMW3 1958 aa1.92□□□□□ -2.1
UPF3B-203ENST00000478840 RP1P56715 2156 aa1.91□□□□□ -2.1
UPF3B-203ENST00000478840 DHFRP00374 187 aa1.91□□□□□ -2.1
UPF3B-203ENST00000478840 RAB4BP61018 213 aa1.91□□□□□ -2.1
UPF3B-203ENST00000478840 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.91□□□□□ -2.1
UPF3B-203ENST00000478840 PRR15Q8IV56 129 aa1.91□□□□□ -2.1
UPF3B-203ENST00000478840 OR4C6Q8NH72 309 aa1.91□□□□□ -2.1
UPF3B-203ENST00000478840 DYDC1Q8WWB3 177 aa1.91□□□□□ -2.1
UPF3B-203ENST00000478840 C6orf62Q9GZU0 229 aaPredicted RBP1.91□□□□□ -2.1
UPF3B-203ENST00000478840 MED11Q9P086 117 aa1.91□□□□□ -2.1
UPF3B-203ENST00000478840 NUBP2Q9Y5Y2 271 aa1.91□□□□□ -2.1
UPF3B-203ENST00000478840 CXCL1P09341 107 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 ARPP19P56211 112 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 KRTAP21-3Q3LHN1 58 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 C1orf137Q5JT78 98 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 TOMM20LQ6UXN7 152 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 TAC4Q86UU9 113 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 IFT20Q8IY31 132 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 C15orf53Q8NAA6 179 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 REG4Q9BYZ8 158 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 MRPL40Q9NQ50 206 aaKnown RBP1.9□□□□□ -2.11
UPF3B-203ENST00000478840 ASB4Q9Y574 426 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 SCN8AQ9UQD0 1980 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 NISCHQ9Y2I1 1504 aa1.9□□□□□ -2.11
UPF3B-203ENST00000478840 TECPR2O15040 1411 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms