RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 TRAV6A0A075B6T7 132 aa8.71□□□□□ -1.02
SYNE1-221ENST00000472563 H3BMM0 161 aa8.71□□□□□ -1.02
SYNE1-221ENST00000472563 TSC22D2O75157 780 aa8.71□□□□□ -1.02
SYNE1-221ENST00000472563 C4BPBP20851 252 aa8.71□□□□□ -1.02
SYNE1-221ENST00000472563 S100A7P31151 101 aa8.71□□□□□ -1.02
SYNE1-221ENST00000472563 ID1P41134 155 aa8.71□□□□□ -1.02
SYNE1-221ENST00000472563 NUTF2P61970 127 aaKnown RBP8.71□□□□□ -1.02
SYNE1-221ENST00000472563 DLK1P80370 383 aa8.71□□□□□ -1.02
SYNE1-221ENST00000472563 SAMD13Q5VXD3 122 aa8.71□□□□□ -1.02
SYNE1-221ENST00000472563 TMEM182Q6ZP80 229 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-221ENST00000472563 ZNF431Q8TF32 576 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-221ENST00000472563 S100ZQ8WXG8 99 aa8.71□□□□□ -1.02
SYNE1-221ENST00000472563 WDR12Q9GZL7 423 aaKnown RBP8.71□□□□□ -1.02
SYNE1-221ENST00000472563 ZNF98A6NK75 572 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 FNDC10F2Z333 226 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 ISLRO14498 428 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 SOCS3O14543 225 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 SCGB1D2O95969 90 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 MBPP02686 304 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-221ENST00000472563 HLA-DRB4P13762 266 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 ORM2P19652 201 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 GATA2P23769 480 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-221ENST00000472563 PSMB3P49720 205 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 SELENOTP62341 195 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 ZNF846Q147U1 533 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 CYP2G1PQ6ZSU1 146 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 CSNK1G2-AS1Q8NCQ2 148 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 OR10P1Q8NGE3 313 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 TMEM147Q9BVK8 224 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 C1QTNF4Q9BXJ3 329 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 MFFQ9GZY8 342 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 RCL1Q9Y2P8 373 aaKnown RBP8.7□□□□□ -1.02
SYNE1-221ENST00000472563 KLK5Q9Y337 293 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-221ENST00000472563 HLA-DRB4X5D2U9 266 aa8.7□□□□□ -1.02
SYNE1-221ENST00000472563 ALMS1Q8TCU4 4167 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 FAM240BA0A1B0GVZ2 78 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 SMCO3A2RU48 225 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 C7orf66A4D0T2 115 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 A6NHS1 94 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 ZNF705EA8MWA4 302 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-221ENST00000472563 K7EPK0 472 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 CCNKO75909 580 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 IL5P05113 134 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 H2AFB2P0C5Z0 115 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 METTL15P1P0C7V9 234 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 MIFP14174 115 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 GALR1P47211 349 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 MEOX2P50222 304 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 PLP1P60201 277 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 ASAH1Q13510 395 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 SPATA31B1PQ5VZV4 182 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 MZT2BQ6NZ67 158 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 FOXI2Q6ZQN5 318 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 C12orf45Q8N5I9 185 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-221ENST00000472563 Q8NAQ8 132 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 C11orf45Q8TAV5 145 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 PHLDA1Q8WV24 401 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-221ENST00000472563 LINC00052Q96N35 136 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 CLUHP3Q96NS8 147 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 GPR82Q96P67 336 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 SEC22CQ9BRL7 303 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 GGACTQ9BVM4 153 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 NPVFQ9HCQ7 196 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 MGAT4CQ9UBM8 478 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 TBC1D24Q9ULP9 559 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 X6R8D5 127 aa8.69□□□□□ -1.02
SYNE1-221ENST00000472563 EPPK1P58107 5090 aaKnown RBP8.69□□□□□ -1.02
SYNE1-221ENST00000472563 FAM25EA8MYX2 175 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 CCSO14618 274 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 DEFB4AO15263 64 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 HYPMO75409 117 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 DEDDO75618 318 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 RRAS2P62070 204 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-221ENST00000472563 OR1B1Q8NGR6 318 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 C17orf77Q96MU5 243 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 RSG1Q9BU20 258 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 SLC25A32Q9H2D1 315 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 HRH4Q9H3N8 390 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 SAV1Q9H4B6 383 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-221ENST00000472563 SLC25A22Q9H936 323 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 CLEC5AQ9NY25 188 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 BIRC6Q9NR09 4857 aa8.68□□□□□ -1.02
SYNE1-221ENST00000472563 IGHV4-28A0A0C4DH34 117 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 C5orf51A6NDU8 294 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 H3BRN7 92 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 L7N2F9 121 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 LINC00869P0C866 280 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 RBMY1A1P0DJD3 496 aaKnown RBP8.67□□□□□ -1.02
SYNE1-221ENST00000472563 RBMY1CP0DJD4 496 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 NANOS2P60321 138 aaKnown RBP8.67□□□□□ -1.02
SYNE1-221ENST00000472563 VAMP2P63027 116 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 ARL16Q0P5N6 197 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 RBMY1FQ15415 496 aaKnown RBP8.67□□□□□ -1.02
SYNE1-221ENST00000472563 TEPPQ6URK8 271 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 S100A7AQ86SG5 101 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 LINC00476Q8WZB0 136 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 C2orf50Q96LR7 162 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 SHANK2-AS3Q9BTD1 123 aa8.67□□□□□ -1.02
SYNE1-221ENST00000472563 SLC25A39Q9BZJ4 359 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-221ENST00000472563 HIGD1AQ9Y241 93 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms