RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 IGHV1-24A0A0C4DH33 117 aa11.11□□□□□ -0.63
COL6A3-209ENST00000472056 TPRX1Q8N7U7 411 aa11.11□□□□□ -0.63
COL6A3-209ENST00000472056 SMRP1Q8NCR6 262 aa11.11□□□□□ -0.63
COL6A3-209ENST00000472056 DCTN5Q9BTE1 182 aa11.11□□□□□ -0.63
COL6A3-209ENST00000472056 TRBV6-6A0A0A6YYG2 114 aa11.11□□□□□ -0.63
COL6A3-209ENST00000472056 IGFBP6P24592 240 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-209ENST00000472056 RNASE4P34096 147 aaKnown RBP11.11□□□□□ -0.63
COL6A3-209ENST00000472056 LHFPL1Q86WI0 220 aa11.11□□□□□ -0.63
COL6A3-209ENST00000472056 IGLV3-32A0A0A0MS00 114 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 PSG8Q9UQ74 426 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 ATXN7O15265 892 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-209ENST00000472056 CD7P09564 240 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 SELLP14151 372 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 ATP6V0BQ99437 205 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 SNRPCP09234 159 aaKnown RBP11.1□□□□□ -0.63
COL6A3-209ENST00000472056 TEX43Q6ZNM6 134 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 H3BQ85 93 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 SIVA1O15304 175 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 TBX6O95947 436 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-209ENST00000472056 RASL10AQ92737 203 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 LINC00477Q96M19 166 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 OOSP1A8MZH6 123 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 GATD1Q8NB37 220 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 SLC25A28Q96A46 364 aa11.1□□□□□ -0.63
COL6A3-209ENST00000472056 C9orf118A6NHY6 69 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 C17orf98A8MV24 154 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 RPL39P5Q59GN2 51 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 PLA2G2FQ9BZM2 168 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 DEFB123Q8N688 67 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 COX6A1P12074 109 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 TAL2Q16559 108 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 MORN2Q502X0 79 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 PYY3Q5JQD4 70 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 ZNF826PQ6ZT77 177 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 SMAD7O15105 426 aaKnown RBP11.09□□□□□ -0.63
COL6A3-209ENST00000472056 ZIC3O60481 467 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 MYO18BQ8IUG5 2567 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 PROB1E7EW31 1015 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 ATG2AQ2TAZ0 1938 aa11.09□□□□□ -0.63
COL6A3-209ENST00000472056 SFTA2Q6UW10 78 aa11.08□□□□□ -0.64
COL6A3-209ENST00000472056 OR11H6Q8NGC7 330 aa11.08□□□□□ -0.64
COL6A3-209ENST00000472056 IGHG4P01861 327 aa11.08□□□□□ -0.64
COL6A3-209ENST00000472056 ACYP1P07311 99 aa11.08□□□□□ -0.64
COL6A3-209ENST00000472056 MAFAQ8NHW3 353 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-209ENST00000472056 TRBV7-1A0A0A6YYK4 115 aa11.08□□□□□ -0.64
COL6A3-209ENST00000472056 ADAMTSL5Q6ZMM2 481 aa11.08□□□□□ -0.64
COL6A3-209ENST00000472056 IL17RELQ6ZVW7 336 aa11.08□□□□□ -0.64
COL6A3-209ENST00000472056 NUP210LQ5VU65 1888 aa11.08□□□□□ -0.64
COL6A3-209ENST00000472056 TMEM141Q96I45 108 aa11.08□□□□□ -0.64
COL6A3-209ENST00000472056 TMEM14EPQ6UXP3 125 aa11.07□□□□□ -0.64
COL6A3-209ENST00000472056 TRGV2A0A075B6R0 118 aa11.07□□□□□ -0.64
COL6A3-209ENST00000472056 SAA2-SAA4A0A096LPE2 208 aa11.07□□□□□ -0.64
COL6A3-209ENST00000472056 SAA2P0DJI9 122 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-209ENST00000472056 CD300EQ496F6 205 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-209ENST00000472056 CXCL1P09341 107 aa11.07□□□□□ -0.64
COL6A3-209ENST00000472056 NUP35Q8NFH5 326 aa11.07□□□□□ -0.64
COL6A3-209ENST00000472056 A0A1W2PQF6 199 aa11.07□□□□□ -0.64
COL6A3-209ENST00000472056 EGR1P18146 543 aa11.07□□□□□ -0.64
COL6A3-209ENST00000472056 CENPVQ7Z7K6 275 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-209ENST00000472056 IGHV2-70P01814 119 aa11.07□□□□□ -0.64
COL6A3-209ENST00000472056 ITGBL1O95965 494 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-209ENST00000472056 C9orf50Q5SZB4 431 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 IGHV3-72A0A0B4J1Y9 119 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 SIGLEC15Q6ZMC9 328 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 UBL5Q9BZL1 73 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 PF4P02776 101 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 PEAR1Q5VY43 1037 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-209ENST00000472056 LINC01587Q99440 93 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 PRADC1Q9BSG0 188 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 D6R8Y8 96 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 SOCS3O14543 225 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 ADARB2-AS1A8MUL3 147 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 IGKV1D-33P01593 117 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 IGKV1-33P01594 117 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 CCL4P13236 92 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 PRR7Q8TB68 274 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 SRXN1Q9BYN0 137 aa11.06□□□□□ -0.64
COL6A3-209ENST00000472056 CHCHD2Q9Y6H1 151 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-209ENST00000472056 TECTAO75443 2155 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 TREML4Q6UXN2 200 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 RAMP3O60896 148 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 HAPLN4Q86UW8 402 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 MPV17L2Q567V2 206 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 ZNRF1Q8ND25 227 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 TMEM133Q9H2Q1 129 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 LINC01565O15544 149 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 LINC00158P58513 81 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 NMSQ5H8A3 153 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 JMJD8Q96S16 334 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 SHISA3A0PJX4 238 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 ZNF883P0CG24 379 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 PRTN3P24158 256 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 PSG3Q16557 428 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 TMEM75Q8N9X5 138 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 TMEM126AQ9H061 195 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 ZNF138P52744 262 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 C10orf91Q5T1B1 145 aa11.05□□□□□ -0.64
COL6A3-209ENST00000472056 MUC21A0A0G2JKD1 596 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 MUC21A0A140T8X8 626 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 MUC21Q5SSG8 566 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms