RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 PPIFP30405 207 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 AMTP48728 403 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 OR1P1Q8NH06 330 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 CHD6Q8TD26 2715 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 LINC01548A6NM66 108 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 PFN1P07737 140 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 ZNF841Q6ZN19 808 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 Q71RC1 249 aaPredicted RBP10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 ARPC1AQ92747 370 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 BTF3L4Q96K17 158 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 C7orf69Q9H7B7 122 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 SRIP30626 198 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 PRR20EP86478 221 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 PRR20CP86479 221 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 PRR20DP86480 221 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 PRR20BP86481 221 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 PRR20AP86496 221 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 CR1LQ2VPA4 569 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 ZNF600Q6ZNG1 722 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 Q8TAT8 98 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 Q9H3A6 140 aa10.95□□□□□ -0.66
CCDC88A-211ENST00000471947 BSNQ9UPA5 3926 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 A0A087WWC5 75 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 PEX7O00628 323 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 HOXA5P20719 270 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 COMPP49747 757 aaPredicted RBP10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 DMRTA1Q5VZB9 504 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 HIST2H2BCQ6DN03 193 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 NAGKQ9UJ70 344 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 DSCAML1Q8TD84 2053 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 PF4V1P10720 104 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 OR4A5Q8NH83 315 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 ST6GALNAC6Q969X2 333 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 TCEAL7Q9BRU2 100 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 HELZ2Q9BYK8 2649 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 GSN-AS1Q9NRJ2 163 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 GGCTO75223 188 aaKnown RBP10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 ZNF705AQ6ZN79 300 aaPredicted RBP10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 VN1R17PQ8TDU5 208 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 ZNF503Q96F45 646 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 SLC25A2Q9BXI2 301 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 PAM16Q9Y3D7 125 aa10.94□□□□□ -0.66
CCDC88A-211ENST00000471947 HLA-DMBP28068 263 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 PMCHL1Q16048 86 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 A6NNC1 897 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 PDLIM4P50479 330 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 C3orf36Q3SXR2 165 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 CLEC2AQ6UVW9 174 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 HIST1H2BLQ99880 126 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 HSPB9Q9BQS6 159 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 PRSS46E5RG02 174 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 NDUFB8O95169 186 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 IGLV1-47P01700 117 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 CLEC3BP05452 202 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 TMEM18Q96B42 140 aa10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 MCRIP2Q9BUT9 160 aaKnown RBP10.93□□□□□ -0.66
CCDC88A-211ENST00000471947 NUPR1O60356 82 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 P01737 135 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 C5orf64Q2M2E5 130 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 C11orf44Q8N8P7 122 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 CACNG8Q8WXS5 425 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 PITPNC1Q9UKF7 332 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 FAM90A9PA6NNJ1 464 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 UBE2CO00762 179 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 CHEK1O14757 476 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 DEFA6Q01524 100 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 GBGT1Q8N5D6 347 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 TEX45Q8NA69 505 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 KDF1Q8NAX2 398 aaPredicted RBP10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 NEU4Q8WWR8 484 aaPredicted RBP10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 ITLN2Q8WWU7 325 aaPredicted RBP10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 C21orf62Q9NYP8 219 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 F11RQ9Y624 299 aaKnown RBP10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 LOC389332A0A1B0GUA5 103 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 FAM106CPP0CH98 169 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 BRS3P32247 399 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 SELENOTP62341 195 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 VWC2Q2TAL6 325 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 HIST3H2BBQ8N257 126 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 KAAG1Q9UBP8 84 aa10.92□□□□□ -0.66
CCDC88A-211ENST00000471947 IGKV2-40A0A087WW87 121 aaPredicted RBP10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 IGKV2D-40P01614 121 aaPredicted RBP10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 ZNF138P52744 262 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 DLX6P56179 175 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 FXYD7P58549 80 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 RNASEH2CQ8TDP1 164 aaKnown RBP10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 HIGD1CA8MV81 97 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 SPRY2O43597 315 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 SERF1AO75920 110 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 IGKV3-20P01619 116 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 RHOGP84095 191 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 C15orf32Q32M92 178 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 CELSR2Q9HCU4 2923 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 SMAD7O15105 426 aaKnown RBP10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 TGFAP01135 160 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 AMBPP02760 352 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 GLMPQ8WWB7 406 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 RNF125Q96EQ8 232 aa10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 SLC25A39Q9BZJ4 359 aaPredicted RBP10.91□□□□□ -0.66
CCDC88A-211ENST00000471947 IGHV4-61A0A0C4DH41 118 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms