RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 AGRNO00468 2067 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 SFT2D2O95562 160 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 SLC25A6P12236 298 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 ORM2P19652 201 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 MEOX2P50222 304 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 PPP1R1AQ13522 171 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 CSNK1G2-AS1Q8NCQ2 148 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 TMEM147Q9BVK8 224 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 RPRMQ9NS64 109 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 GOLT1BQ9Y3E0 138 aa12.67□□□□□ -0.38
COL7A1-206ENST00000466591 STRAPQ9Y3F4 350 aaKnown RBP12.67□□□□□ -0.38
COL7A1-206ENST00000466591 TMEM189A5PLL7 270 aa12.66□□□□□ -0.38
COL7A1-206ENST00000466591 H3BP45 60 aa12.66□□□□□ -0.38
COL7A1-206ENST00000466591 IFNA21P01568 189 aa12.66□□□□□ -0.38
COL7A1-206ENST00000466591 SPATA31B1PQ5VZV4 182 aa12.66□□□□□ -0.38
COL7A1-206ENST00000466591 LRTM2Q8N967 370 aa12.66□□□□□ -0.38
COL7A1-206ENST00000466591 TMEM208Q9BTX3 173 aa12.66□□□□□ -0.38
COL7A1-206ENST00000466591 WDR12Q9GZL7 423 aaKnown RBP12.66□□□□□ -0.38
COL7A1-206ENST00000466591 SAV1Q9H4B6 383 aaPredicted RBP12.66□□□□□ -0.38
COL7A1-206ENST00000466591 APLNQ9ULZ1 77 aa12.66□□□□□ -0.38
COL7A1-206ENST00000466591 V9GYH0 126 aa12.66□□□□□ -0.38
COL7A1-206ENST00000466591 IGKV1D-37A0A075B6S9 117 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 ISLRO14498 428 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 PITX3O75364 302 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 SPART-AS1P0CW21 52 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 FGL1Q08830 312 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 GDF5OSQ5U4N7 250 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 OR1B1Q8NGR6 318 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 NDUFAF3Q9BU61 184 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 RNF126Q9BV68 326 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 CELA1Q9UNI1 258 aa12.65□□□□□ -0.38
COL7A1-206ENST00000466591 CENPXA8MT69 81 aa12.64□□□□□ -0.39
COL7A1-206ENST00000466591 DEFB1P60022 68 aa12.64□□□□□ -0.39
COL7A1-206ENST00000466591 PSG9Q00887 426 aa12.64□□□□□ -0.39
COL7A1-206ENST00000466591 THAP8Q8NA92 274 aa12.64□□□□□ -0.39
COL7A1-206ENST00000466591 RFNGQ9Y644 331 aa12.64□□□□□ -0.39
COL7A1-206ENST00000466591 TEX48A0A1B0GUV7 120 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 LINC00854A0A1B0GVQ3 168 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 SMIM9A6NGZ8 99 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 HBE1P02100 147 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 UBE2MP61081 183 aaKnown RBP12.63□□□□□ -0.39
COL7A1-206ENST00000466591 RAP2BP61225 183 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 ZNF79Q15937 498 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 C12orf74Q32Q52 190 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 C4orf46Q504U0 113 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 S100A7AQ86SG5 101 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 GPR82Q96P67 336 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 RSG1Q9BU20 258 aa12.63□□□□□ -0.39
COL7A1-206ENST00000466591 NAP1L6A6NFF2 107 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 SSSCA1O60232 199 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 SCGB1D2O95969 90 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 IL5P05113 134 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 P0DMU3 169 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 FAM231AP0DMU4 169 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 FAM231CP0DMU5 169 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 HTN3P15516 51 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 PRR20EP86478 221 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 PRR20CP86479 221 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 PRR20DP86480 221 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 PRR20BP86481 221 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 PRR20AP86496 221 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 FAM78BQ5VT40 261 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 ACOT7LQ6ZUV0 252 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 UBE2DNLQ8IWF7 75 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 SLC35B3Q9H1N7 401 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 SLC25A32Q9H2D1 315 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 PSENENQ9NZ42 101 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 DOK5Q9P104 306 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 SLC45A2Q9UMX9 530 aa12.62□□□□□ -0.39
COL7A1-206ENST00000466591 ZNF98A6NK75 572 aa12.61□□□□□ -0.39
COL7A1-206ENST00000466591 F6UB75 175 aa12.61□□□□□ -0.39
COL7A1-206ENST00000466591 AMBPP02760 352 aa12.61□□□□□ -0.39
COL7A1-206ENST00000466591 CCDC190Q86UF4 302 aa12.61□□□□□ -0.39
COL7A1-206ENST00000466591 LRRC20Q8TCA0 184 aa12.61□□□□□ -0.39
COL7A1-206ENST00000466591 NEU1Q99519 415 aa12.61□□□□□ -0.39
COL7A1-206ENST00000466591 PPP1R14DQ9NXH3 145 aa12.61□□□□□ -0.39
COL7A1-206ENST00000466591 IGKV1OR2-108A0A075B7D4 117 aa12.6□□□□□ -0.39
COL7A1-206ENST00000466591 C9orf170A2RU37 121 aa12.6□□□□□ -0.39
COL7A1-206ENST00000466591 ADAP1O75689 374 aa12.6□□□□□ -0.39
COL7A1-206ENST00000466591 OR5G3P0C626 314 aa12.6□□□□□ -0.39
COL7A1-206ENST00000466591 GATA2P23769 480 aaPredicted RBP12.6□□□□□ -0.39
COL7A1-206ENST00000466591 POLR2GP62487 172 aaKnown RBP eCLIP12.6□□□□□ -0.39
COL7A1-206ENST00000466591 GSG1LQ6UXU4 331 aa12.6□□□□□ -0.39
COL7A1-206ENST00000466591 ZNF705AQ6ZN79 300 aaPredicted RBP12.6□□□□□ -0.39
COL7A1-206ENST00000466591 OR4D5Q8NGN0 318 aa12.6□□□□□ -0.39
COL7A1-206ENST00000466591 MGAT4CQ9UBM8 478 aa12.6□□□□□ -0.39
COL7A1-206ENST00000466591 HIGD1AQ9Y241 93 aa12.6□□□□□ -0.39
COL7A1-206ENST00000466591 SOCS3O14543 225 aa12.59□□□□□ -0.39
COL7A1-206ENST00000466591 RRAS2P62070 204 aaPredicted RBP12.59□□□□□ -0.39
COL7A1-206ENST00000466591 RRN3P1Q2M238 152 aa12.59□□□□□ -0.39
COL7A1-206ENST00000466591 CYP2G1PQ6ZSU1 146 aa12.59□□□□□ -0.39
COL7A1-206ENST00000466591 NIPSNAP3BQ9BS92 247 aa12.59□□□□□ -0.39
COL7A1-206ENST00000466591 A0A0J9YX75 114 aa12.58□□□□□ -0.4
COL7A1-206ENST00000466591 LOC102723971A0A1B0GUV8 181 aa12.58□□□□□ -0.4
COL7A1-206ENST00000466591 ZNF705FA8MVS1 300 aaPredicted RBP12.58□□□□□ -0.4
COL7A1-206ENST00000466591 NDUFB6O95139 128 aa12.58□□□□□ -0.4
COL7A1-206ENST00000466591 DUSP14O95147 198 aaKnown RBP12.58□□□□□ -0.4
COL7A1-206ENST00000466591 ZNF705DP0CH99 300 aaPredicted RBP12.58□□□□□ -0.4
COL7A1-206ENST00000466591 ZNF705BP0CI00 300 aaPredicted RBP12.58□□□□□ -0.4
COL7A1-206ENST00000466591 PAX9P55771 341 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms