RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 KLF12Q9Y4X4 402 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 LOC105371242A0A075B767 164 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 K7EIM0 57 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 NBR2O15453 112 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 IGKV1-17P01599 117 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 HLA-DQA1P01909 254 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 SRIP30626 198 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 SLAQ13239 276 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 KLF17Q5JT82 389 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-217ENST00000466159 LINC00322Q6ZN03 302 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-217ENST00000466159 GRAMD2BQ96HH9 432 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 RBM14Q96PK6 669 aaKnown RBP7.09□□□□□ -1.27
SYNE1-217ENST00000466159 SAMD10Q9BYL1 202 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 SLC25A39Q9BZJ4 359 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-217ENST00000466159 ZNF331Q9NQX6 463 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-217ENST00000466159 S4R3C0 116 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 ZNF705FA8MVS1 300 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-217ENST00000466159 ZNF705DP0CH99 300 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-217ENST00000466159 ZNF705BP0CI00 300 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-217ENST00000466159 CDKN1AP38936 164 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 HES1Q14469 280 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 USF2Q15853 346 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-217ENST00000466159 COX19Q49B96 90 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 GDF5OSQ5U4N7 250 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 C5orf17Q8NAS9 161 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 GPR82Q96P67 336 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 TBX15Q96SF7 602 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 ATG101Q9BSB4 218 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 ZNF586Q9NXT0 402 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 RNF114Q9Y508 228 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 A6NNC1 897 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 HIGD1CA8MV81 97 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 VWC2LB2RUY7 222 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 TCAPO15273 167 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 ZNF253O75346 499 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 TOX4O94842 621 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 APCSP02743 223 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 TCRAP04437 139 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 PRR31Q5SQ13 230 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 MLST8Q9BVC4 326 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 HIVEP3Q5T1R4 2406 aa7.08□□□□□ -1.28
SYNE1-217ENST00000466159 TRAV8-1A0A0A6YYK1 113 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 A0A1W2PPR1 153 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 ODF3BA8MYP8 253 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 PRB4P10163 310 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-217ENST00000466159 HIST1H1EP10412 219 aaKnown RBP7.07□□□□□ -1.28
SYNE1-217ENST00000466159 PRTN3P24158 256 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 BRS3P32247 399 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 TDRG1Q3Y452 100 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 OR10J3Q5JRS4 329 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 TOMM20LQ6UXN7 152 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 DYNAPQ8N1N2 210 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 EXOC3-AS1Q8N2X6 119 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 TSKUQ8WUA8 353 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 NDUFAF3Q9BU61 184 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 MRPL27Q9P0M9 148 aaKnown RBP7.07□□□□□ -1.28
SYNE1-217ENST00000466159 NCOR2Q9Y618 2525 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 A0A1W2PS18 150 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 M0R1W7 72 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 NDUFS7O75251 213 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 NDUFA3O95167 84 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 TOMM40O96008 361 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 LTAP01374 205 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 GPX1P07203 203 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 CEACAM3P40198 252 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 Q71RC1 249 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-217ENST00000466159 TCF24Q7RTU0 167 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 SIGLECL1Q8N7X8 197 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 NPBQ8NG41 125 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 NEU4Q8WWR8 484 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-217ENST00000466159 C17orf77Q96MU5 243 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 SRSF8Q9BRL6 282 aaKnown RBP7.07□□□□□ -1.28
SYNE1-217ENST00000466159 SSBP4Q9BWG4 385 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-217ENST00000466159 CHD8Q9HCK8 2581 aa7.07□□□□□ -1.28
SYNE1-217ENST00000466159 CAMPP49913 170 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 NUTF2P61970 127 aaKnown RBP7.06□□□□□ -1.28
SYNE1-217ENST00000466159 C1orf194Q5T5A4 169 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 WIPF2Q8TF74 440 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-217ENST00000466159 FMC1Q96HJ9 113 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 AKAP6Q13023 2319 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 PMCHP20382 165 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 ZFP36P26651 326 aaKnown RBP7.06□□□□□ -1.28
SYNE1-217ENST00000466159 GPR6P46095 362 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-217ENST00000466159 AMTP48728 403 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 RELQ04864 619 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-217ENST00000466159 C5orf64Q2M2E5 130 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 VMO1Q7Z5L0 202 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 BCL6BQ8N143 479 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-217ENST00000466159 ZNF491Q8N8L2 437 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 VN1R17PQ8TDU5 208 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 KCNS1Q96KK3 526 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 CHRDL1Q9BU40 450 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 OTORQ9NRC9 128 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 TMEM14CQ9P0S9 112 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 FBXL7Q9UJT9 491 aa7.06□□□□□ -1.28
SYNE1-217ENST00000466159 TBL2Q9Y4P3 447 aaKnown RBP7.06□□□□□ -1.28
SYNE1-217ENST00000466159 NCBP2LA6PVI3 153 aaKnown RBP7.05□□□□□ -1.28
SYNE1-217ENST00000466159 LY6DQ14210 128 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 RASL11AQ6T310 242 aa7.05□□□□□ -1.28
SYNE1-217ENST00000466159 CIARTQ8N365 385 aaPredicted RBP7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms