RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 NEU4Q8WWR8 484 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 MRPL20Q9BYC9 149 aaKnown RBP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 MINOS1-NBL1R4GNA1 71 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 PMS2P5A8MQ11 134 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 KIAA1644Q3SXP7 199 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 TANC2Q9HCD6 1990 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 C5orf63A6NC05 138 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 OCIAD2Q56VL3 154 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 IGF2-ASQ6U949 168 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 IGFL3Q6UXB1 125 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 ZNRF1Q8ND25 227 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 IFI27L1Q96BM0 104 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 F11RQ9Y624 299 aaKnown RBP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 FSTL3O95633 263 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 KLF17Q5JT82 389 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 SSBP3Q9BWW4 388 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-216ENST00000461872 LENEPQ9Y5L5 61 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 VKORC1L1Q8N0U8 176 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 TPRX1Q8N7U7 411 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 SHANK2-AS3Q9BTD1 123 aa5.75□□□□□ -1.49
SYNE1-216ENST00000461872 HLA-DRB4P13762 266 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 OR10J6PQ8NGY7 276 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 ZNF48Q96MX3 618 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-216ENST00000461872 HLA-DRB4X5D2U9 266 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 IGHV3-64DA0A0J9YX35 117 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 M0R1W7 72 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 CA1P00915 261 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-216ENST00000461872 HIST1H4GQ99525 98 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 PRSS46E5RG02 174 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 CD177Q8N6Q3 437 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 ONECUT1Q9UBC0 465 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 FBXL7Q9UJT9 491 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 LTAP01374 205 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 DEFB125Q8N687 156 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 EEF1AKMT3Q96AZ1 226 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 LY6G6EA0A0G2JKS1 128 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 SLC25A16P16260 332 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 HIGD1BQ9P298 99 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 PSG8Q9UQ74 426 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 U3KQA8 63 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 IGKV1D-17A0A075B6S4 117 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 F8W1H4 67 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 CHTOPQ9Y3Y2 248 aaKnown RBP5.74□□□□□ -1.49
SYNE1-216ENST00000461872 ZNF137PP52743 207 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 PSG3Q16557 428 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 A0A0G2JLM5 398 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 GAGE12BA1L429 117 aa5.74□□□□□ -1.49
SYNE1-216ENST00000461872 EGR1P18146 543 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 SPACA3Q8IXA5 215 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 SSBP4Q9BWG4 385 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-216ENST00000461872 TRBV20-1A0A075B6N2 111 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 PPIAL4CA0A0B4J2A2 164 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 PPIAL4GP0DN37 164 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 LOXL3P58215 753 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 GCSAMLQ5JQS6 135 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 RFNGQ9Y644 331 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 NAV3Q8IVL0 2385 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 IGHV1-18A0A0C4DH31 117 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 RBAKDNA6NC62 111 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 LDLRAD2Q5SZI1 272 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 FAM19A2Q8N3H0 131 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 IGHV3OR15-7A0A075B7D8 119 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 GGTLC3B5MD39 225 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 AGFG2O95081 481 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 DLX1P56177 255 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 SIGMAR1Q99720 223 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 K7EM74 188 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 CRIP3Q6Q6R5 217 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 SMAD7O15105 426 aaKnown RBP5.73□□□□□ -1.49
SYNE1-216ENST00000461872 Q0VFX4 171 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 ZNF562Q6V9R5 426 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 MRAP2Q96G30 205 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 CELA3AP09093 270 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 UFC1Q9Y3C8 167 aa5.73□□□□□ -1.49
SYNE1-216ENST00000461872 ARFGEF3Q5TH69 2177 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 C9orf118A6NHY6 69 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 MAFAQ8NHW3 353 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-216ENST00000461872 COL6A6A6NMZ7 2263 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 C9orf172C9J069 976 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 PLPPR2Q96GM1 343 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 SP5Q6BEB4 398 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-216ENST00000461872 C1orf122Q6ZSJ8 110 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 PHLDA3Q9Y5J5 127 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 CCL8P80075 99 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 DDB2Q92466 427 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 MRPL53Q96EL3 112 aaKnown RBP5.72□□□□□ -1.49
SYNE1-216ENST00000461872 IGKCP01834 107 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 FOXA3P55318 350 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-216ENST00000461872 TMUB1Q9BVT8 246 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 OVOL1O14753 267 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 CELA3BP08861 270 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 PSMB2P49721 201 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 LAGE3Q14657 143 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 TMEM155Q4W5P6 130 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 OR11H6Q8NGC7 330 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 NPFFR1Q9GZQ6 430 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 FZR1Q9UM11 496 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 F5H697 171 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 K7EP34 96 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 NPPCP23582 126 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms