RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SPTA1P02549 2419 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 ATP5G1P05496 136 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 EIF4EP06730 217 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 MDKP21741 143 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 PRSS3P35030 304 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 GFERP55789 205 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 FBXW4P57775 412 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 PLGLB1Q02325 96 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 NUMA1Q14980 2115 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 OR7A5Q15622 319 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 MSMO1Q15800 293 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 RRN3P1Q2M238 152 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 SPRNQ5BIV9 151 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 SLC25A42Q86VD7 318 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 RAB42Q8N4Z0 105 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 OR2T6Q8NHC8 308 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 TSACCQ96A04 125 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 NUP210LQ5VU65 1888 aa3.8□□□□□ -1.8
CCDC88A-209ENST00000456975 TRAV27A0A087WT01 109 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 A0A1B0GVT2 93 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 A8MT66 165 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 C17orf112F2Z3M2 114 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF883P0CG24 379 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 IGLL1P15814 213 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 PSMB8P28062 276 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 PPP1CCP36873 323 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 KRTDAPP60985 99 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 SLC25A34Q6PIV7 304 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 C8orf49Q96NF6 230 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 SMIM14Q96QK8 99 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 MRPL20Q9BYC9 149 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 PCTPQ9UKL6 214 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 KLF13Q9Y2Y9 288 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 KLK5Q9Y337 293 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 PIEZO2Q9H5I5 2752 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 CFAP46Q8IYW2 2715 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 TEP1Q99973 2627 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 USP9XQ93008 2570 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 TRAV4A0A0B4J268 109 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 FAM220BPB1ANY3 271 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 SMKR1H3BMG3 65 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 SDCBPO00560 298 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 GPR137BO60478 399 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 CRYGAP11844 174 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 GP1BBP13224 206 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 RPL22P35268 128 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 TAS2R45P59539 299 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 HERV-K104P61576 105 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 RPL18AQ02543 176 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 DPTQ07507 201 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 ELOCQ15369 112 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 KLF17Q5JT82 389 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 ZC2HC1BQ5TFG8 222 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 RFLNAQ6ZTI6 216 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 SIGLECL1Q8N7X8 197 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 LMX1AQ8TE12 382 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 BORCS8Q96FH0 119 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 FAM19A4Q96LR4 140 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 MANBALQ9NQG1 85 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 VSIG4Q9Y279 399 aa3.79□□□□□ -1.8
CCDC88A-209ENST00000456975 ANKRD36A6QL64 1941 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 SAA2-SAA4A0A096LPE2 208 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 SPTY2D1-AS1A0A0U1RR47 76 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 TMEM272A0A1B0GTI8 110 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 CCL21O00585 134 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 GNGT2O14610 69 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 WNT9BO14905 357 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 DEDDO75618 318 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 LYZL6O75951 148 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 EPPINO95925 133 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 SOD1P00441 154 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 IGHG1P01857 330 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 GYPAP02724 150 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 CD3DP04234 171 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 FGF1P05230 155 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 P0DMU3 169 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 FAM231AP0DMU4 169 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 FAM231CP0DMU5 169 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 HOXB6P17509 224 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 CFPP27918 469 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 SAA4P35542 130 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 ASIPP42127 132 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 SPINT3P49223 89 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 POU3F1Q03052 451 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 ARFRP1Q13795 201 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 VMA21Q3ZAQ7 101 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 HMGN2P46Q86SG4 172 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 ANKRD29Q8N6D5 301 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 NUP35Q8NFH5 326 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 OR5H2Q8NGV7 314 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 SGMS2Q8NHU3 365 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 KRTAP4-8Q9BYQ9 185 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 GABARAPL1Q9H0R8 117 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 CACNG5Q9UF02 275 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 LSM2Q9Y333 95 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 FIS1Q9Y3D6 152 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 DNAJC15Q9Y5T4 150 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 KCNE3Q9Y6H6 103 aa3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 ARHGEF17Q96PE2 2063 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-209ENST00000456975 TRBV6-7A0A0A0MS04 114 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms