RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 PEF1Q9UBV8 284 aaKnown RBP8.43□□□□□ -1.06
SCN9A-205ENST00000454569 NUDT19A8MXV4 375 aa8.42□□□□□ -1.06
SCN9A-205ENST00000454569 YPEL3P61236 119 aaPredicted RBP8.42□□□□□ -1.06
SCN9A-205ENST00000454569 B2MP61769 119 aa8.42□□□□□ -1.06
SCN9A-205ENST00000454569 RAB31Q13636 194 aa8.42□□□□□ -1.06
SCN9A-205ENST00000454569 USF2Q15853 346 aaPredicted RBP8.42□□□□□ -1.06
SCN9A-205ENST00000454569 ZNF726P1Q15940 193 aa8.42□□□□□ -1.06
SCN9A-205ENST00000454569 TOMM20LQ6UXN7 152 aa8.42□□□□□ -1.06
SCN9A-205ENST00000454569 LINC00469Q8N7U9 141 aa8.42□□□□□ -1.06
SCN9A-205ENST00000454569 KLHL30-AS1Q8NEE0 82 aa8.42□□□□□ -1.06
SCN9A-205ENST00000454569 RPRMQ9NS64 109 aa8.42□□□□□ -1.06
SCN9A-205ENST00000454569 PUS1Q9Y606 427 aaKnown RBP eCLIP8.42□□□□□ -1.06
SCN9A-205ENST00000454569 TRRAPQ9Y4A5 3859 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 TRAV30A0A087WSZ9 112 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 WI2-2373I1.2A0A1W2PRP0 233 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 ZNF207O43670 478 aaKnown RBP8.41□□□□□ -1.06
SCN9A-205ENST00000454569 TSPAN15O95858 294 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 TOMM40O96008 361 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 MBP02144 154 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 RD3LP0DJH9 198 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 SLURP1P55000 103 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 FOXL1Q12952 345 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 IL34Q6ZMJ4 242 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 RPP25LQ8N5L8 163 aaKnown RBP8.41□□□□□ -1.06
SCN9A-205ENST00000454569 OR51G1Q8NGK1 321 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 MARC2Q969Z3 335 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 UHRF2Q96PU4 802 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 C19orf24Q9BVV8 132 aa8.41□□□□□ -1.06
SCN9A-205ENST00000454569 TRAV5A0A0B4J249 113 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 HMGB3O15347 200 aaKnown RBP8.4□□□□□ -1.06
SCN9A-205ENST00000454569 NUPL2O15504 423 aaKnown RBP8.4□□□□□ -1.06
SCN9A-205ENST00000454569 IL4P05112 153 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 H2AFB1P0C5Y9 115 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 ORM2P19652 201 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 LYZP61626 148 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 ACOT6Q3I5F7 207 aaPredicted RBP8.4□□□□□ -1.06
SCN9A-205ENST00000454569 NSUN5P1Q3KNT7 163 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 LYPD6BQ8NI32 183 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 C4orf3Q8WVX3 66 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 RAX2Q96IS3 184 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 SEPSECSQ9HD40 501 aaKnown RBP8.4□□□□□ -1.06
SCN9A-205ENST00000454569 SELENOKQ9Y6D0 94 aa8.4□□□□□ -1.06
SCN9A-205ENST00000454569 A0A1B0GV50 99 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 RAB19A4D1S5 217 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 HBE1P02100 147 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 APOHP02749 345 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-205ENST00000454569 M6PRP20645 277 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 C21orf62-AS1Q17RA5 79 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 ZNF600Q6ZNG1 722 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 EIF4E3Q8N5X7 224 aaKnown RBP8.39□□□□□ -1.07
SCN9A-205ENST00000454569 OR11H1Q8NG94 326 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 OR10G4Q8NGN3 311 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 OR10G9Q8NGN4 311 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 OR10G7Q8NGN6 311 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 OR1B1Q8NGR6 318 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 PBDC1Q9BVG4 233 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 MRPL27Q9P0M9 148 aaKnown RBP8.39□□□□□ -1.07
SCN9A-205ENST00000454569 TSSC4Q9Y5U2 329 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-205ENST00000454569 IGHV3OR16-13A0A075B7E8 117 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 IGHV3-49A0A0A0MS15 119 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 IGHV3-74A0A0B4J1X5 117 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 A0A1B0GUS0 222 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 GGCTO75223 188 aaKnown RBP8.39□□□□□ -1.07
SCN9A-205ENST00000454569 HSPB1P04792 205 aaKnown RBP8.39□□□□□ -1.07
SCN9A-205ENST00000454569 PLP1P60201 277 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 SELENOTP62341 195 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 LEMD1Q68G75 181 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 FAM122CQ6P4D5 195 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 SPSB3Q6PJ21 355 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 UQCC3Q6UW78 93 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 MIR17HGQ75NE6 70 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 OR1N2Q8NGR9 330 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 SPATA3Q8NHX4 192 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 Q8WTZ3 238 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 SFT2D1Q8WV19 159 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 RNF125Q96EQ8 232 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 ATP6V0BQ99437 205 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 SLC25A22Q9H936 323 aa8.39□□□□□ -1.07
SCN9A-205ENST00000454569 CMYA5Q8N3K9 4069 aa8.38□□□□□ -1.07
SCN9A-205ENST00000454569 OR5G3P0C626 314 aa8.38□□□□□ -1.07
SCN9A-205ENST00000454569 BTF3P20290 206 aaKnown RBP8.38□□□□□ -1.07
SCN9A-205ENST00000454569 HOXD3P31249 432 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-205ENST00000454569 TM4SF20Q53R12 229 aa8.38□□□□□ -1.07
SCN9A-205ENST00000454569 TOR2AQ5JU69 321 aa8.38□□□□□ -1.07
SCN9A-205ENST00000454569 SVIPQ8NHG7 77 aa8.38□□□□□ -1.07
SCN9A-205ENST00000454569 CITED1Q99966 193 aa8.38□□□□□ -1.07
SCN9A-205ENST00000454569 C20orf24Q9BUV8 137 aa8.38□□□□□ -1.07
SCN9A-205ENST00000454569 ACTR3CQ9C0K3 210 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-205ENST00000454569 DNAJC4Q9NNZ3 241 aa8.38□□□□□ -1.07
SCN9A-205ENST00000454569 GAR1Q9NY12 217 aaKnown RBP8.38□□□□□ -1.07
SCN9A-205ENST00000454569 SORL1Q92673 2214 aa8.38□□□□□ -1.07
SCN9A-205ENST00000454569 IGHV3-66A0A0C4DH42 116 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 CTXND1A0A1B0GTU2 59 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 A0A1W2PPV4 95 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 ZNF320A2RRD8 509 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 MAP1LC3B2A6NCE7 125 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 LINC01619G3V211 115 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 SNRPCP09234 159 aaKnown RBP8.37□□□□□ -1.07
SCN9A-205ENST00000454569 CDC34P49427 236 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-205ENST00000454569 FGF8P55075 233 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms