RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	TMED3	Q9Y3Q3	217 aa		6.32	□□□□□ -1.4
RFX3-209	ENST00000451859	VPS13D	Q5THJ4	4388 aa		6.32	□□□□□ -1.4
RFX3-209	ENST00000451859	FRAS1	Q86XX4	4008 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	PIGBOS1	A0A0B4J2F0	54 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	IGHV4-28	A0A0C4DH34	117 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	SMCO3	A2RU48	225 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	SYNGR2	O43760	224 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	MED6	O75586	246 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	GIG44	P09565	113 aa	Predicted RBP	6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	SPP1	P10451	314 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	ANXA7	P20073	488 aa	Known RBP	6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	GPX4	P36969	197 aa	Predicted RBP	6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	FXYD7	P58549	80 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	SNRPD3	P62318	126 aa	Known RBP	6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	AKR1C1	Q04828	323 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	GGNBP1	Q5YKI7	109 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	MORN3	Q6PF18	240 aa	Predicted RBP	6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	LRTM2	Q8N967	370 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859		Q8NAQ8	132 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	LINC00052	Q96N35	136 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	RAB40C	Q96S21	281 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	C11orf68	Q9H3H3	251 aa	Known RBP	6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	DNAH6	Q9C0G6	4158 aa		6.31	□□□□□ -1.4
RFX3-209	ENST00000451859	IGKV1OR2-108	A0A075B7D4	117 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	C9orf170	A2RU37	121 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	SNRPGP15	A8MWD9	76 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	SSSCA1	O60232	199 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	SCGB1D2	O95969	90 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	FABP1	P07148	127 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	RBMY1A1	P0DJD3	496 aa	Known RBP	6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	RBMY1C	P0DJD4	496 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	ATF4	P18848	351 aa	Predicted RBP	6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	GATA2	P23769	480 aa	Predicted RBP	6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	ATP5I	P56385	69 aa	Predicted RBP	6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	UBE2M	P61081	183 aa	Known RBP	6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	POLR2G	P62487	172 aa	Known RBP eCLIP	6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	RBMY1F	Q15415	496 aa	Known RBP	6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	C4orf46	Q504U0	113 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	GDF5OS	Q5U4N7	250 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	OR8I2	Q8N0Y5	310 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	COQ8A	Q8NI60	647 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	CIB3	Q96Q77	187 aa	Predicted RBP	6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	TRGV9	Q99603	122 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	WDR12	Q9GZL7	423 aa	Known RBP	6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	MFF	Q9GZY8	342 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	SLC25A22	Q9H936	323 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	XCL2	Q9UBD3	114 aa		6.3	□□□□□ -1.4
RFX3-209	ENST00000451859	IGHV3OR16-12	A0A075B7B8	117 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	NAP1L6	A6NFF2	107 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	ZNF701	M0R085	212 aa	Predicted RBP	6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	DEDD	O75618	318 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	NDUFB6	O95139	128 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	OR4E1	P0C645	316 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	SLC25A6	P12236	298 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	IL7	P13232	177 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	ORM2	P19652	201 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	NUP62	P37198	522 aa	Predicted RBP	6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	RPP30	P78346	268 aa	Known RBP	6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	OR8G2P	Q6IF36	304 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	ACOT7L	Q6ZUV0	252 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	ZNF767P	Q75MW2	155 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	THAP8	Q8NA92	274 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	DEDD2	Q8WXF8	326 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	SDHC	Q99643	169 aa	Predicted RBP	6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	DOK5	Q9P104	306 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	PFDN2	Q9UHV9	154 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	TBC1D24	Q9ULP9	559 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	STRAP	Q9Y3F4	350 aa	Known RBP	6.29	□□□□□ -1.4
RFX3-209	ENST00000451859		X6R8D5	127 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	DNAH10	Q8IVF4	4471 aa		6.29	□□□□□ -1.4
RFX3-209	ENST00000451859	CENPX	A8MT69	81 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	IGLL5	B9A064	214 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859		F6UB75	175 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859		H3BMM0	161 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	CCNK	O75909	580 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	IFNA21	P01568	189 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	MIF	P14174	115 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	HLA-DMB	P28068	263 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	BTC	P35070	178 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	ID1	P41134	155 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	NKX2-1	P43699	371 aa	Predicted RBP	6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	NUTF2	P61970	127 aa	Known RBP	6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	RRAS2	P62070	204 aa	Predicted RBP	6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	TMEM41B	Q5BJD5	291 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	RPP25L	Q8N5L8	163 aa	Known RBP	6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	BPIFC	Q8NFQ6	507 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	OR4B1	Q8NGF8	309 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	OR1B1	Q8NGR6	318 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	C2CD4C	Q8TF44	421 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	SLC25A32	Q9H2D1	315 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	PSENEN	Q9NZ42	101 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	CELA1	Q9UNI1	258 aa		6.28	□□□□□ -1.4
RFX3-209	ENST00000451859	ZNF705E	A8MWA4	302 aa	Predicted RBP	6.27	□□□□□ -1.41
RFX3-209	ENST00000451859	PRSS46	E5RG02	174 aa		6.27	□□□□□ -1.41
RFX3-209	ENST00000451859	HLA-DRB4	P13762	266 aa		6.27	□□□□□ -1.41
RFX3-209	ENST00000451859	PSMB3	P49720	205 aa		6.27	□□□□□ -1.41
RFX3-209	ENST00000451859	EMP1	P54849	157 aa		6.27	□□□□□ -1.41
RFX3-209	ENST00000451859	FGL1	Q08830	312 aa		6.27	□□□□□ -1.41
RFX3-209	ENST00000451859	IAH1	Q2TAA2	248 aa	Predicted RBP	6.27	□□□□□ -1.41
RFX3-209	ENST00000451859	IGFL4	Q6B9Z1	124 aa		6.27	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms