RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 LINC00052Q96N35 136 aa14.98□□□□□ -0.01
SDC1-205ENST00000447124 PFDN2Q9UHV9 154 aa14.98□□□□□ -0.01
SDC1-205ENST00000447124 HLA-DRB4X5D2U9 266 aa14.98□□□□□ -0.01
SDC1-205ENST00000447124 H3BP45 60 aa14.97□□□□□ -0.01
SDC1-205ENST00000447124 HLA-DMBP28068 263 aa14.97□□□□□ -0.01
SDC1-205ENST00000447124 BTCP35070 178 aa14.97□□□□□ -0.01
SDC1-205ENST00000447124 POLR2GP62487 172 aaKnown RBP eCLIP14.97□□□□□ -0.01
SDC1-205ENST00000447124 RPP30P78346 268 aaKnown RBP14.97□□□□□ -0.01
SDC1-205ENST00000447124 C2CD4CQ8TF44 421 aa14.97□□□□□ -0.01
SDC1-205ENST00000447124 TRIQKQ629K1 86 aa14.96□□□□□ -0.01
SDC1-205ENST00000447124 APLNQ9ULZ1 77 aa14.96□□□□□ -0.01
SDC1-205ENST00000447124 PMS2P5A8MQ11 134 aa14.95□□□□□ -0.02
SDC1-205ENST00000447124 IGKV3-20P01619 116 aa14.95□□□□□ -0.02
SDC1-205ENST00000447124 OR4E1P0C645 316 aa14.95□□□□□ -0.02
SDC1-205ENST00000447124 ANXA7P20073 488 aaKnown RBP14.95□□□□□ -0.02
SDC1-205ENST00000447124 INPP1P49441 399 aa14.95□□□□□ -0.02
SDC1-205ENST00000447124 FXYD7P58549 80 aa14.95□□□□□ -0.02
SDC1-205ENST00000447124 OR8I2Q8N0Y5 310 aa14.95□□□□□ -0.02
SDC1-205ENST00000447124 OR4D5Q8NGN0 318 aa14.95□□□□□ -0.02
SDC1-205ENST00000447124 PPP1R14BQ96C90 147 aa14.95□□□□□ -0.02
SDC1-205ENST00000447124 SAV1Q9H4B6 383 aaPredicted RBP14.95□□□□□ -0.02
SDC1-205ENST00000447124 CELA1Q9UNI1 258 aa14.95□□□□□ -0.02
SDC1-205ENST00000447124 STRAPQ9Y3F4 350 aaKnown RBP14.95□□□□□ -0.02
SDC1-205ENST00000447124 IGLL5B9A064 214 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 ID1P41134 155 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 PAX9P55771 341 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 NUTF2P61970 127 aaKnown RBP14.94□□□□□ -0.02
SDC1-205ENST00000447124 PRR20EP86478 221 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 PRR20CP86479 221 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 PRR20DP86480 221 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 PRR20BP86481 221 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 PRR20AP86496 221 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 Q6ZTC4 211 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 C20orf173Q96LM9 149 aa14.94□□□□□ -0.02
SDC1-205ENST00000447124 ZNF98A6NK75 572 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 C11orf94C9JXX5 98 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 F6UB75 175 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 CFDP00746 253 aaPredicted RBP14.93□□□□□ -0.02
SDC1-205ENST00000447124 PSMB3P49720 205 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 C12orf74Q32Q52 190 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 ZNF705AQ6ZN79 300 aaPredicted RBP14.93□□□□□ -0.02
SDC1-205ENST00000447124 FOXI2Q6ZQN5 318 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 ACOT7LQ6ZUV0 252 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 COQ8AQ8NI60 647 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 C1QTNF4Q9BXJ3 329 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 SLC25A32Q9H2D1 315 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 PSENENQ9NZ42 101 aa14.93□□□□□ -0.02
SDC1-205ENST00000447124 CCNKO75909 580 aa14.92□□□□□ -0.02
SDC1-205ENST00000447124 ORM2P19652 201 aa14.92□□□□□ -0.02
SDC1-205ENST00000447124 ZNF767PQ75MW2 155 aa14.92□□□□□ -0.02
SDC1-205ENST00000447124 TMEM144Q7Z5S9 345 aa14.92□□□□□ -0.02
SDC1-205ENST00000447124 CLUHP3Q96NS8 147 aa14.92□□□□□ -0.02
SDC1-205ENST00000447124 RSG1Q9BU20 258 aa14.92□□□□□ -0.02
SDC1-205ENST00000447124 ISLRO14498 428 aa14.91□□□□□ -0.02
SDC1-205ENST00000447124 PLA2G10O15496 165 aa14.91□□□□□ -0.02
SDC1-205ENST00000447124 IL7P13232 177 aa14.91□□□□□ -0.02
SDC1-205ENST00000447124 TCTAP57738 103 aa14.91□□□□□ -0.02
SDC1-205ENST00000447124 ZNF709Q8N972 641 aa14.91□□□□□ -0.02
SDC1-205ENST00000447124 BPIFCQ8NFQ6 507 aa14.91□□□□□ -0.02
SDC1-205ENST00000447124 SMIM8Q96KF7 97 aa14.91□□□□□ -0.02
SDC1-205ENST00000447124 SLC25A22Q9H936 323 aa14.91□□□□□ -0.02
SDC1-205ENST00000447124 SLC45A2Q9UMX9 530 aa14.91□□□□□ -0.02
SDC1-205ENST00000447124 ZNF705FA8MVS1 300 aaPredicted RBP14.9□□□□□ -0.02
SDC1-205ENST00000447124 IFNA21P01568 189 aa14.9□□□□□ -0.02
SDC1-205ENST00000447124 ZNF705DP0CH99 300 aaPredicted RBP14.9□□□□□ -0.02
SDC1-205ENST00000447124 ZNF705BP0CI00 300 aaPredicted RBP14.9□□□□□ -0.02
SDC1-205ENST00000447124 AKR1C1Q04828 323 aa14.9□□□□□ -0.02
SDC1-205ENST00000447124 C4orf46Q504U0 113 aa14.9□□□□□ -0.02
SDC1-205ENST00000447124 OR4B1Q8NGF8 309 aa14.9□□□□□ -0.02
SDC1-205ENST00000447124 NEU1Q99519 415 aa14.9□□□□□ -0.02
SDC1-205ENST00000447124 SLC35B3Q9H1N7 401 aa14.9□□□□□ -0.02
SDC1-205ENST00000447124 TRAV10A0A0B4J240 114 aa14.89□□□□□ -0.03
SDC1-205ENST00000447124 A0A0J9YX75 114 aa14.89□□□□□ -0.03
SDC1-205ENST00000447124 SSSCA1O60232 199 aa14.89□□□□□ -0.03
SDC1-205ENST00000447124 TMEM14EPQ6UXP3 125 aa14.89□□□□□ -0.03
SDC1-205ENST00000447124 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.89□□□□□ -0.03
SDC1-205ENST00000447124 CYP2G1PQ6ZSU1 146 aa14.89□□□□□ -0.03
SDC1-205ENST00000447124 OR1B1Q8NGR6 318 aa14.89□□□□□ -0.03
SDC1-205ENST00000447124 C7orf50Q9BRJ6 194 aaKnown RBP14.89□□□□□ -0.03
SDC1-205ENST00000447124 CENPXA8MT69 81 aa14.88□□□□□ -0.03
SDC1-205ENST00000447124 GALR1P47211 349 aa14.88□□□□□ -0.03
SDC1-205ENST00000447124 FAM78BQ5VT40 261 aa14.88□□□□□ -0.03
SDC1-205ENST00000447124 IGFL4Q6B9Z1 124 aa14.88□□□□□ -0.03
SDC1-205ENST00000447124 MITD1Q8WV92 249 aa14.88□□□□□ -0.03
SDC1-205ENST00000447124 C16orf92Q96LL3 132 aa14.88□□□□□ -0.03
SDC1-205ENST00000447124 TMEM147Q9BVK8 224 aa14.88□□□□□ -0.03
SDC1-205ENST00000447124 SCRT1Q9BWW7 348 aa14.88□□□□□ -0.03
SDC1-205ENST00000447124 TRAV8-2A0A0B4J237 113 aa14.87□□□□□ -0.03
SDC1-205ENST00000447124 SMCO3A2RU48 225 aa14.87□□□□□ -0.03
SDC1-205ENST00000447124 IL5P05113 134 aa14.87□□□□□ -0.03
SDC1-205ENST00000447124 PSG9Q00887 426 aa14.87□□□□□ -0.03
SDC1-205ENST00000447124 IAH1Q2TAA2 248 aaPredicted RBP14.87□□□□□ -0.03
SDC1-205ENST00000447124 SPATA31B1PQ5VZV4 182 aa14.87□□□□□ -0.03
SDC1-205ENST00000447124 EBLN2Q6P2I7 272 aa14.87□□□□□ -0.03
SDC1-205ENST00000447124 C1orf158Q8N1D5 194 aa14.87□□□□□ -0.03
SDC1-205ENST00000447124 ZBTB8BQ8NAP8 495 aaPredicted RBP14.87□□□□□ -0.03
SDC1-205ENST00000447124 DOK5Q9P104 306 aa14.87□□□□□ -0.03
SDC1-205ENST00000447124 IGHV4-4A0A075B6R2 117 aa14.86□□□□□ -0.03
SDC1-205ENST00000447124 IGHV3OR16-12A0A075B7B8 117 aa14.86□□□□□ -0.03
SDC1-205ENST00000447124 H3BRN7 92 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms