RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 RPH3ALQ9UNE2 315 aa12.7□□□□□ -0.38
SHQ1-202ENST00000444040 HIGD1CA8MV81 97 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 K7EIM0 57 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 HTR1DP28221 377 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 MMDQ15546 238 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 FMC1Q96HJ9 113 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 TMEM68Q96MH6 324 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 PRSS22Q9GZN4 317 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 RAB1BQ9H0U4 201 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 MRPL27Q9P0M9 148 aaKnown RBP12.69□□□□□ -0.38
SHQ1-202ENST00000444040 TMEM14CQ9P0S9 112 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 DPM3Q9P2X0 92 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 TBL2Q9Y4P3 447 aaKnown RBP12.69□□□□□ -0.38
SHQ1-202ENST00000444040 ZZEF1O43149 2961 aa12.69□□□□□ -0.38
SHQ1-202ENST00000444040 RASL11BQ9BPW5 248 aa12.68□□□□□ -0.38
SHQ1-202ENST00000444040 FAM103A1Q9BTL3 118 aaKnown RBP12.68□□□□□ -0.38
SHQ1-202ENST00000444040 ZNF586Q9NXT0 402 aa12.68□□□□□ -0.38
SHQ1-202ENST00000444040 ANKHD1Q8IWZ3 2542 aaKnown RBP12.68□□□□□ -0.38
SHQ1-202ENST00000444040 C19orf71A6NCJ1 209 aa12.68□□□□□ -0.38
SHQ1-202ENST00000444040 Q8N976 141 aa12.68□□□□□ -0.38
SHQ1-202ENST00000444040 C18orf32Q8TCD1 76 aa12.68□□□□□ -0.38
SHQ1-202ENST00000444040 NRN1Q9NPD7 142 aa12.68□□□□□ -0.38
SHQ1-202ENST00000444040 CBLN4Q9NTU7 201 aa12.68□□□□□ -0.38
SHQ1-202ENST00000444040 HILPDAQ9Y5L2 63 aa12.68□□□□□ -0.38
SHQ1-202ENST00000444040 A0A1B0GXF2 115 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 NBR2O15453 112 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 CNIH1O95406 144 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 AMTP48728 403 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 C11orf71Q6IPW1 123 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 VN1R17PQ8TDU5 208 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 EREGO14944 169 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 ZNF324O75467 553 aaPredicted RBP12.67□□□□□ -0.38
SHQ1-202ENST00000444040 NDUFA3O95167 84 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 KLRB1Q12918 225 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 NPBQ8NG41 125 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 IGFBPL1Q8WX77 278 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 RAXQ9Y2V3 346 aa12.67□□□□□ -0.38
SHQ1-202ENST00000444040 ODF3BA8MYP8 253 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 FBLN7Q53RD9 439 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 C20orf144Q9BQM9 153 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 OTORQ9NRC9 128 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 ZNF492Q9P255 531 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 KLRD1Q13241 179 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 ATP5L2Q7Z4Y8 100 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 TIMD4Q96H15 378 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 RPP21Q9H633 154 aaKnown RBP12.66□□□□□ -0.38
SHQ1-202ENST00000444040 M0R1W7 72 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 OR2J3O76001 311 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 UCNP55089 124 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 CT83Q5H943 113 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 NIT1Q86X76 327 aa12.66□□□□□ -0.38
SHQ1-202ENST00000444040 DCHS2Q6V1P9 2916 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 A6NNC1 897 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 PMCHP20382 165 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 CD24P25063 80 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 TCF24Q7RTU0 167 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 SNHG12Q9BXW3 62 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 IGLV2-11P01706 119 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 HOXB4P17483 251 aaPredicted RBP12.65□□□□□ -0.38
SHQ1-202ENST00000444040 PRTN3P24158 256 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 KRTDAPP60985 99 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 EXOC3-AS1Q8N2X6 119 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 GTSF1Q8WW33 167 aa12.65□□□□□ -0.38
SHQ1-202ENST00000444040 SSBP4Q9BWG4 385 aaPredicted RBP12.65□□□□□ -0.38
SHQ1-202ENST00000444040 LOC105371242A0A075B767 164 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 CEACAM3P40198 252 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 KLF5Q13887 457 aaPredicted RBP12.64□□□□□ -0.39
SHQ1-202ENST00000444040 RBM14Q96PK6 669 aaKnown RBP12.64□□□□□ -0.39
SHQ1-202ENST00000444040 ALKBH7Q9BT30 221 aaPredicted RBP12.64□□□□□ -0.39
SHQ1-202ENST00000444040 SHANK2-AS3Q9BTD1 123 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 LRBAP50851 2863 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 ABCA1O95477 2261 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 ABCA4P78363 2273 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 TRAV8-1A0A0A6YYK1 113 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 CAMPP49913 170 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 Q86TA4 180 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 FAM19A2Q8N3H0 131 aa12.64□□□□□ -0.39
SHQ1-202ENST00000444040 TPRP12270 2363 aaKnown RBP12.63□□□□□ -0.39
SHQ1-202ENST00000444040 A8MWL6 223 aa12.63□□□□□ -0.39
SHQ1-202ENST00000444040 H3BRN7 92 aa12.63□□□□□ -0.39
SHQ1-202ENST00000444040 P01737 135 aa12.63□□□□□ -0.39
SHQ1-202ENST00000444040 RNF224P0DH78 156 aa12.63□□□□□ -0.39
SHQ1-202ENST00000444040 GPR6P46095 362 aaPredicted RBP12.63□□□□□ -0.39
SHQ1-202ENST00000444040 ZNF491Q8N8L2 437 aa12.63□□□□□ -0.39
SHQ1-202ENST00000444040 NEU4Q8WWR8 484 aaPredicted RBP12.63□□□□□ -0.39
SHQ1-202ENST00000444040 NPIPB6E9PJ23 425 aa12.63□□□□□ -0.39
SHQ1-202ENST00000444040 C5orf64Q2M2E5 130 aa12.63□□□□□ -0.39
SHQ1-202ENST00000444040 PAM16Q9Y3D7 125 aa12.63□□□□□ -0.39
SHQ1-202ENST00000444040 TRBV19A0A075B6N1 114 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 DIRC3C9JPN6 131 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 RAB4AP20338 218 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 KLF17Q5JT82 389 aaPredicted RBP12.62□□□□□ -0.39
SHQ1-202ENST00000444040 Q71RC1 249 aaPredicted RBP12.62□□□□□ -0.39
SHQ1-202ENST00000444040 C17orf77Q96MU5 243 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 VAMP8Q9BV40 100 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 TACC2O95359 2948 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 ARHGAP32A7KAX9 2087 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 IGLC2P0DOY2 106 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 HBBP68871 147 aa12.62□□□□□ -0.39
SHQ1-202ENST00000444040 BPIFA4PQ86YQ2 179 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms