RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 A0A1W2PRM7 423 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 AMN1Q8IY45 258 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 OCC1Q8TAD7 63 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 C11orf52Q96A22 123 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 LOC105371242A0A075B767 164 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 PPIAL4CA0A0B4J2A2 164 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 FOXS1O43638 330 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 PPIAL4GP0DN37 164 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 Q5BKY6 102 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 ATP5EP2Q5VTU8 51 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 FAM19A2Q8N3H0 131 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 PLXNB3Q9ULL4 1909 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 H3BMG7 143 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 PATE1Q8WXA2 126 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 USMG5Q96IX5 58 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 TRBV7-1A0A0A6YYK4 115 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 C12orf77C9JDV5 145 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 TIAF1O95411 115 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 TCTEX1D4Q5JR98 221 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 HGFACQ04756 655 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 ANKRD29Q8N6D5 301 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 VGLL1Q99990 258 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 GPR179Q6PRD1 2367 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 ZNF664Q8N3J9 261 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 SIGLEC12Q96PQ1 595 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 TRPM7Q96QT4 1865 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 TIMM21Q9BVV7 248 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 IGHV1-69DA0A0B4J2H0 117 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 M0R381 172 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 NPFFR1Q9GZQ6 430 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 CSTL1Q9H114 145 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 A0A0J9YW62 118 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 KLRD1Q13241 179 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 RNF152Q8N8N0 203 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 NUP35Q8NFH5 326 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 TMEM167AQ8TBQ9 72 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 NPC2P61916 151 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 TEN1Q86WV5 123 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 TMEM52Q8NDY8 209 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 LYPD6BQ8NI32 183 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 LOC102723996A0A087X1L8 192 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 TMEM240Q5SV17 173 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 FBXL15Q9H469 300 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 ZNF576Q9H609 170 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 TTTY12Q9BZ98 90 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 HAX1O00165 279 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 RSPO4Q2I0M5 234 aaPredicted RBP5.98□□□□□ -1.45
VPS53-204ENST00000437048 ZNF385AQ96PM9 386 aaKnown RBP5.98□□□□□ -1.45
VPS53-204ENST00000437048 C2CD4DB7Z1M9 353 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 CCL3L1P16619 93 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 C9orf50Q5SZB4 431 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 CCL4L1Q8NHW4 92 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 SHISA8B8ZZ34 492 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 PRSS46E5RG02 174 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 ITGBL1O95965 494 aaPredicted RBP5.98□□□□□ -1.45
VPS53-204ENST00000437048 TREML4Q6UXN2 200 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 IGKV3D-15A0A087WSY6 115 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 TMEM14CQ9P0S9 112 aa5.98□□□□□ -1.45
VPS53-204ENST00000437048 DENND4AQ7Z401 1863 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 CYTL1Q9NRR1 136 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 IGHV1OR15-9A0A0B4J2B8 117 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 CD28P10747 220 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 HCFC1P51610 2035 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 IGKV1D-42A0A075B6H8 117 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 NDUFA3O95167 84 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 TCRAP04437 139 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 RPL36AP83881 106 aaKnown RBP5.97□□□□□ -1.45
VPS53-204ENST00000437048 RPL36ALQ969Q0 106 aaKnown RBP5.97□□□□□ -1.45
VPS53-204ENST00000437048 RLFQ13129 1914 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 F8VRH5 84 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 H0YGX0 51 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 GREM1O60565 184 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 TDGF1P13385 188 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 NDUFC1O43677 76 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 V9GYY9 64 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 MUC21A0A0G2JKD1 596 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 MUC21A0A140T8X8 626 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 IGFBP2P18065 325 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 DEFB109BQ30KR1 87 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 MUC21Q5SSG8 566 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 PRADC1Q9BSG0 188 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 LYRM9A8MSI8 78 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 DEFB125Q8N687 156 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 OR13A1Q8NGR1 328 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 RHOHQ15669 191 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 SSC4DQ8WTU2 575 aa5.97□□□□□ -1.45
VPS53-204ENST00000437048 RNASE7Q9H1E1 156 aaKnown RBP5.97□□□□□ -1.45
VPS53-204ENST00000437048 C3orf36Q3SXR2 165 aa5.96□□□□□ -1.45
VPS53-204ENST00000437048 PROB1E7EW31 1015 aa5.96□□□□□ -1.45
VPS53-204ENST00000437048 NPYP01303 97 aa5.96□□□□□ -1.45
VPS53-204ENST00000437048 AGRNO00468 2067 aa5.96□□□□□ -1.45
VPS53-204ENST00000437048 OBSL1O75147 1896 aa5.96□□□□□ -1.45
VPS53-204ENST00000437048 A0A1W2PQF6 199 aa5.96□□□□□ -1.45
VPS53-204ENST00000437048 TRPT1Q86TN4 253 aaKnown RBP5.96□□□□□ -1.45
VPS53-204ENST00000437048 CT55Q8WUE5 264 aa5.96□□□□□ -1.45
VPS53-204ENST00000437048 IGHV1-45A0A0A0MS14 117 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 APOBEC3AP31941 199 aaPredicted RBP5.96□□□□□ -1.46
VPS53-204ENST00000437048 RPP25LQ8N5L8 163 aaKnown RBP5.96□□□□□ -1.46
VPS53-204ENST00000437048 FOXQ1Q9C009 403 aa5.96□□□□□ -1.46
VPS53-204ENST00000437048 GFRA1P56159 465 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms