RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SLC25A2Q9BXI2 301 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 C2CD3Q4AC94 2353 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 INSP01308 110 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 COQ2Q96H96 371 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 TEX38Q6PEX7 206 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 PYYP10082 97 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 Q71RC1 249 aaPredicted RBP9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 H3BUX3 64 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 TRBV6-7A0A0A0MS04 114 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 FABP5P3A8MUU1 101 aa9.98□□□□□ -0.81
CCDC88A-207ENST00000436346 IGLV3-32A0A0A0MS00 114 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 IFITM3Q01628 133 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 GGNQ86UU5 652 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 LYZL4Q96KX0 146 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 RCHY1Q96PM5 261 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 SRRM4A7MD48 611 aaKnown RBP9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 MLNRO43193 412 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 NPC2P61916 151 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 CTAG1AP78358 180 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 Q5BKY6 102 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 ZNF525Q8N782 197 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 IGKV1D-13A0A0B4J2D9 117 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 IGKV1-13P0DP09 117 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 TDGF1P3P51864 188 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 LAGE3Q14657 143 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 SPCS1Q9Y6A9 102 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 TMEM178BH3BS89 294 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 IGHV1-8P0DP01 117 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 PAQR4Q8N4S7 273 aaPredicted RBP9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 TLN1Q9Y490 2541 aaKnown RBP9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 NAT1P18440 290 aa9.97□□□□□ -0.81
CCDC88A-207ENST00000436346 OR9G9P0C7N8 305 aa9.96□□□□□ -0.81
CCDC88A-207ENST00000436346 Q5PR19 223 aa9.96□□□□□ -0.81
CCDC88A-207ENST00000436346 SFTA2Q6UW10 78 aa9.96□□□□□ -0.81
CCDC88A-207ENST00000436346 DUTP33316 252 aaKnown RBP9.96□□□□□ -0.81
CCDC88A-207ENST00000436346 NHLRC3Q5JS37 347 aa9.96□□□□□ -0.81
CCDC88A-207ENST00000436346 LINC00114Q6XXX2 140 aa9.96□□□□□ -0.82
CCDC88A-207ENST00000436346 PGPEP1LA6NFU8 196 aa9.96□□□□□ -0.82
CCDC88A-207ENST00000436346 FAM90A9PA6NNJ1 464 aa9.96□□□□□ -0.82
CCDC88A-207ENST00000436346 IL18BPO95998 194 aa9.96□□□□□ -0.82
CCDC88A-207ENST00000436346 PPIFP30405 207 aaKnown RBP9.96□□□□□ -0.82
CCDC88A-207ENST00000436346 A0A1B0GV90 55 aa9.96□□□□□ -0.82
CCDC88A-207ENST00000436346 CD5P06127 495 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 EXOC3-AS1Q8N2X6 119 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 MESP1Q9BRJ9 268 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 A0A087WV48 116 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 F2Z2F3 143 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 SPSB3Q6PJ21 355 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 PIP4P2Q8N4L2 257 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 GHRHP01286 108 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 ORMDL2Q53FV1 153 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 GTF3AQ92664 365 aaKnown RBP9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 NTN3O00634 580 aaPredicted RBP9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 LINC00158P58513 81 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 PRCDQ00LT1 54 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 CHTOPQ9Y3Y2 248 aaKnown RBP9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 IGHV1-3A0A0C4DH29 117 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 OVOL1O14753 267 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 GZMBP10144 247 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 JPT2Q9H910 190 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 EPDR1Q9UM22 224 aa9.95□□□□□ -0.82
CCDC88A-207ENST00000436346 CMC4P56277 68 aaPredicted RBP9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 DPM2O94777 84 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 SLC25A48Q6ZT89 311 aaKnown RBP9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 TMEM144Q7Z5S9 345 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 SLC25A15Q9Y619 301 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 TRAV2A0A0B4J234 112 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 A0A0U1RRA0 63 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 LINC00271P0C7V0 271 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 MAPK1IP1LQ8NDC0 245 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 LOC102723996A0A087X1L8 192 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 CA1P00915 261 aaPredicted RBP9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 IGFBP3P17936 291 aaPredicted RBP9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 Q0VFX4 171 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 ERCC8Q13216 396 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 SRSF6Q13247 344 aaKnown RBP9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 DEFB104AQ8WTQ1 72 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 GGTLC3B5MD39 225 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 FCN3O75636 299 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 IGHV3-53P01767 116 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 STAG3L3P0CL85 134 aa9.94□□□□□ -0.82
CCDC88A-207ENST00000436346 PMS2P5A8MQ11 134 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 NPIPB5A8MRT5 1133 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 EFNB3Q15768 340 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 FLVCR1-AS1Q8TAF5 88 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 M0R1W7 72 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 LY6HO94772 140 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 A0A1B0GTI1 187 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 A0A1B0GWB2 263 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 GATA4P43694 442 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 MINOS1Q5TGZ0 78 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 TNFRSF14Q92956 283 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 MINOS1-NBL1R4GNA1 71 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 FAM223BA6NKX1 122 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 RNF223E7ERA6 249 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 FAM223AQ8IWN6 122 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 SLC25A39Q9BZJ4 359 aaPredicted RBP9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 ZNF98A6NK75 572 aa9.93□□□□□ -0.82
CCDC88A-207ENST00000436346 USMG5Q96IX5 58 aa9.92□□□□□ -0.82
CCDC88A-207ENST00000436346 CCL1P22362 96 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms