RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ALDH3B2P48448 385 aa10.38□□□□□ -0.75
SDC1-204ENST00000429035 DYNC2LI1Q8TCX1 351 aa10.38□□□□□ -0.75
SDC1-204ENST00000429035 RAB2BQ8WUD1 216 aa10.38□□□□□ -0.75
SDC1-204ENST00000429035 C16orf92Q96LL3 132 aa10.38□□□□□ -0.75
SDC1-204ENST00000429035 NEU1Q99519 415 aa10.38□□□□□ -0.75
SDC1-204ENST00000429035 NIPSNAP3BQ9BS92 247 aa10.38□□□□□ -0.75
SDC1-204ENST00000429035 TEX48A0A1B0GUV7 120 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 LOC102723971A0A1B0GUV8 181 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 SMIM9A6NGZ8 99 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 SNRPGP15A8MWD9 76 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 IFNA21P01568 189 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 HBE1P02100 147 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 FAUP35544 74 aaKnown RBP10.37□□□□□ -0.75
SDC1-204ENST00000429035 GPX4P36969 197 aaPredicted RBP10.37□□□□□ -0.75
SDC1-204ENST00000429035 PSG9Q00887 426 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 FAM78BQ5VT40 261 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 ZNF709Q8N972 641 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 TMEM208Q9BTX3 173 aa10.37□□□□□ -0.75
SDC1-204ENST00000429035 FABP12A6NFH5 140 aa10.36□□□□□ -0.75
SDC1-204ENST00000429035 SOCS3O14543 225 aa10.36□□□□□ -0.75
SDC1-204ENST00000429035 GALR1P47211 349 aa10.36□□□□□ -0.75
SDC1-204ENST00000429035 C1orf194Q5T5A4 169 aa10.36□□□□□ -0.75
SDC1-204ENST00000429035 TRGV9Q99603 122 aa10.36□□□□□ -0.75
SDC1-204ENST00000429035 MAGT1Q9H0U3 335 aa10.36□□□□□ -0.75
SDC1-204ENST00000429035 SLC25A32Q9H2D1 315 aa10.36□□□□□ -0.75
SDC1-204ENST00000429035 PLA2G2EQ9NZK7 142 aa10.36□□□□□ -0.75
SDC1-204ENST00000429035 DKK2Q9UBU2 259 aa10.36□□□□□ -0.75
SDC1-204ENST00000429035 NACAE9PAV3 2078 aa10.35□□□□□ -0.75
SDC1-204ENST00000429035 ISLRO14498 428 aa10.35□□□□□ -0.75
SDC1-204ENST00000429035 ATP5IP56385 69 aaPredicted RBP10.35□□□□□ -0.75
SDC1-204ENST00000429035 AKR1C1Q04828 323 aa10.35□□□□□ -0.75
SDC1-204ENST00000429035 ZNF79Q15937 498 aa10.35□□□□□ -0.75
SDC1-204ENST00000429035 RRN3P1Q2M238 152 aa10.35□□□□□ -0.75
SDC1-204ENST00000429035 C20orf173Q96LM9 149 aa10.35□□□□□ -0.75
SDC1-204ENST00000429035 RPRMQ9NS64 109 aa10.35□□□□□ -0.75
SDC1-204ENST00000429035 DOK5Q9P104 306 aa10.35□□□□□ -0.75
SDC1-204ENST00000429035 YTHDF2Q9Y5A9 579 aaKnown RBP10.35□□□□□ -0.75
SDC1-204ENST00000429035 FAT2Q9NYQ8 4349 aa10.35□□□□□ -0.75
SDC1-204ENST00000429035 DNAH2Q9P225 4427 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 PIGBOS1A0A0B4J2F0 54 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 A0A0J9YX75 114 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 DUXBA0A1W2PPF3 345 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 SMCO3A2RU48 225 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 H3BP45 60 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 WRBO00258 174 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 RTL8CO15255 209 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 MED6O75586 246 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 ORM2P19652 201 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 MEOX2P50222 304 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 DAD1P61803 113 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 FGL1Q08830 312 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 PYDC2Q56P42 97 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 SAMD13Q5VXD3 122 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 SPATA31B1PQ5VZV4 182 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 OR1B1Q8NGR6 318 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 MCFD2Q8NI22 146 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 TMEM147Q9BVK8 224 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 KIAA1109Q2LD37 5005 aa10.34□□□□□ -0.75
SDC1-204ENST00000429035 PKHD1P08F94 4074 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 IGKV1OR2-108A0A075B7D4 117 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 A0A1B0GVY2 172 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 HOXB5P09067 269 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 GATA2P23769 480 aaPredicted RBP10.33□□□□□ -0.76
SDC1-204ENST00000429035 TNFSF8P32971 234 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 PAX9P55771 341 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 AP3S2P59780 193 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 RPP30P78346 268 aaKnown RBP10.33□□□□□ -0.76
SDC1-204ENST00000429035 SPANXN5Q5MJ07 72 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 GGNBP1Q5YKI7 109 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 TMEM88Q6PEY1 159 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 C1orf158Q8N1D5 194 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 TOMM5Q8N4H5 51 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 THAP8Q8NA92 274 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 BPIFCQ8NFQ6 507 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 CIB3Q96Q77 187 aaPredicted RBP10.33□□□□□ -0.76
SDC1-204ENST00000429035 RSG1Q9BU20 258 aa10.33□□□□□ -0.76
SDC1-204ENST00000429035 SLIRPQ9GZT3 109 aaKnown RBP10.33□□□□□ -0.76
SDC1-204ENST00000429035 ZNF98A6NK75 572 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 PITX3O75364 302 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 TMBIM6P55061 237 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 SPINK13Q1W4C9 94 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 LGALS9BQ3B8N2 356 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 TMEM128Q5BJH2 165 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 IGFL4Q6B9Z1 124 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 ACOT7LQ6ZUV0 252 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 FAM210BQ96KR6 192 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 CLUHP3Q96NS8 147 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 BCL7BQ9BQE9 202 aa10.32□□□□□ -0.76
SDC1-204ENST00000429035 H3BMQ9 156 aa10.31□□□□□ -0.76
SDC1-204ENST00000429035 M0R2Z0 102 aa10.31□□□□□ -0.76
SDC1-204ENST00000429035 SYNGR2O43760 224 aa10.31□□□□□ -0.76
SDC1-204ENST00000429035 CFDP00746 253 aaPredicted RBP10.31□□□□□ -0.76
SDC1-204ENST00000429035 INSP01308 110 aa10.31□□□□□ -0.76
SDC1-204ENST00000429035 PPP1R1AQ13522 171 aa10.31□□□□□ -0.76
SDC1-204ENST00000429035 ZNF738Q8NE65 137 aa10.31□□□□□ -0.76
SDC1-204ENST00000429035 TRIM63Q969Q1 353 aa10.31□□□□□ -0.76
SDC1-204ENST00000429035 MUC4Q99102 2169 aa10.31□□□□□ -0.76
SDC1-204ENST00000429035 ZNF705GA8MUZ8 300 aaPredicted RBP10.3□□□□□ -0.76
SDC1-204ENST00000429035 SFT2D2O95562 160 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms