RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 NDUFB2O95178 105 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 IFNA7P01567 189 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 TFPTP0C1Z6 253 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 P0C880 135 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 HLA-DMBP28068 263 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 GLRXP35754 106 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 CCR2P41597 374 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 ATP5G3P48201 142 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 TFAMQ00059 246 aaKnown RBP1.96□□□□□ -2.1
USP40-204ENST00000427947 AKR1C1Q04828 323 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 MOGQ16653 247 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 AMMECR1LQ6DCA0 310 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 ZFAND6Q6FIF0 208 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 RPL22L1Q6P5R6 122 aaKnown RBP1.96□□□□□ -2.1
USP40-204ENST00000427947 BPIFA4PQ86YQ2 179 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 MUC7Q8TAX7 377 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 ZNF675Q8TD23 568 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 SLC7A6Q92536 515 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 MIXL1Q9H2W2 232 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 C16orf95Q9H693 158 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 TVP23BQ9NYZ1 205 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 TP73-AS1Q9UF72 201 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 SMPXQ9UHP9 88 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 KLK5Q9Y337 293 aaPredicted RBP1.96□□□□□ -2.1
USP40-204ENST00000427947 NDUFAF1Q9Y375 327 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 HEY1Q9Y5J3 304 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 SYNMO15061 1565 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 SDK2Q58EX2 2172 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 MROH2AA6NES4 1674 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 ITGB4P16144 1822 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 MROH1Q8NDA8 1641 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 USP32Q8NFA0 1604 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 FAT3Q8TDW7 4589 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 CCDC141Q6ZP82 1450 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 ARHGAP31Q2M1Z3 1444 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 IGKV1D-43A0A0B4J1Z2 117 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 LOC105371267A0A1B0GV96 52 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 MAP1LC3B2A6NCE7 125 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 C17orf98A8MV24 154 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 J3QRK9 145 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 AIPO00170 330 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 CREBL2O60519 120 aaPredicted RBP1.95□□□□□ -2.1
USP40-204ENST00000427947 IFNA10P01566 189 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 IGLV6-57P01721 117 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 BPGMP07738 259 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 SPI1P17947 270 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 CASP1P29466 404 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 CA5AP35218 305 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 EIF2B2P49770 351 aaKnown RBP1.95□□□□□ -2.1
USP40-204ENST00000427947 RBM11P57052 281 aaKnown RBP1.95□□□□□ -2.1
USP40-204ENST00000427947 TPI1P60174 286 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 DEFB134Q4QY38 66 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 LYRM7Q5U5X0 104 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 DCUN1D2Q6PH85 259 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 Q6Q795 121 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 Q8NAQ8 132 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 H1FXQ92522 213 aaKnown RBP1.95□□□□□ -2.1
USP40-204ENST00000427947 TMEM70Q9BUB7 260 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 DERL1Q9BUN8 251 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 DDA1Q9BW61 102 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 HIGD2AQ9BW72 106 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 MAP1LC3BQ9GZQ8 125 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 ACER3Q9NUN7 267 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 TXNL4BQ9NX01 149 aaKnown RBP1.95□□□□□ -2.1
USP40-204ENST00000427947 MRPL16Q9NX20 251 aaKnown RBP1.95□□□□□ -2.1
USP40-204ENST00000427947 MED11Q9P086 117 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 NAT8Q9UHE5 227 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 R4GN34 69 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 MINOS1-NBL1R4GNA1 71 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 THADAQ6YHU6 1953 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 CHD5Q8TDI0 1954 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 ATAD5Q96QE3 1844 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 ZNF142P52746 1687 aaPredicted RBP1.95□□□□□ -2.1
USP40-204ENST00000427947 PRDM15P57071 1507 aaPredicted RBP1.95□□□□□ -2.1
USP40-204ENST00000427947 ABCC12Q96J65 1359 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 CNTRLQ7Z7A1 2325 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 DEPDC5O75140 1603 aa1.95□□□□□ -2.1
USP40-204ENST00000427947 LRRC9Q6ZRR7 1453 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 AKAP9Q99996 3911 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 SETD5Q9C0A6 1442 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 RRBP1Q9P2E9 1410 aaKnown RBP1.94□□□□□ -2.1
USP40-204ENST00000427947 ZC3H13Q5T200 1668 aaKnown RBP1.94□□□□□ -2.1
USP40-204ENST00000427947 A0A1W2PQD3 144 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 H3BT86 120 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 NPYP01303 97 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 IGKV1-5P01602 117 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 C1QBP02746 253 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 GZMBP10144 247 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 S100A4P26447 101 aaKnown RBP1.94□□□□□ -2.1
USP40-204ENST00000427947 XCL1P47992 114 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 GABRA4P48169 554 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 PSMD8P48556 350 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 PIGPP57054 158 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 CCL20P78556 96 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 RPL18Q07020 188 aaKnown RBP1.94□□□□□ -2.1
USP40-204ENST00000427947 ALX1Q15699 326 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 CLVS1Q8IUQ0 354 aaPredicted RBP1.94□□□□□ -2.1
USP40-204ENST00000427947 OR13C4Q8NGS5 318 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 TM2D3Q9BRN9 247 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 GINS4Q9BRT9 223 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms