RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 PRSS12P56730 875 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 PIGYQ3MUY2 71 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 DUX4L9Q6RFH8 374 aaPredicted RBP8.02□□□□□ -1.13
USP54-205ENST00000424265 C3orf56Q8N813 242 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 MCRIP2Q9BUT9 160 aaKnown RBP8.02□□□□□ -1.13
USP54-205ENST00000424265 C9JAW5 83 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 RPL31P62899 125 aaKnown RBP8.01□□□□□ -1.13
USP54-205ENST00000424265 EFNB3Q15768 340 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 RPP25LQ8N5L8 163 aaKnown RBP8.01□□□□□ -1.13
USP54-205ENST00000424265 HEYLQ9NQ87 328 aaPredicted RBP8.01□□□□□ -1.13
USP54-205ENST00000424265 HIGD1AQ9Y241 93 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 WISP1O95388 367 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 XGP55808 180 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 OR10J6PQ8NGY7 276 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 ATP6V0E2Q8NHE4 81 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 SSBP3Q9BWW4 388 aaPredicted RBP8.01□□□□□ -1.13
USP54-205ENST00000424265 FAM106CPP0CH98 169 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 FAM106AQ4KMX7 169 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 Q6AWC8 147 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 PQLC2Q6ZP29 291 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 ZNF714Q96N38 554 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 THBDP07204 575 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 GNG5P63218 68 aa8.01□□□□□ -1.13
USP54-205ENST00000424265 CENPVL3A0A0U1RRI6 287 aa8□□□□□ -1.13
USP54-205ENST00000424265 PPYP01298 95 aa8□□□□□ -1.13
USP54-205ENST00000424265 ZNF415Q09FC8 603 aa8□□□□□ -1.13
USP54-205ENST00000424265 HIST1H4GQ99525 98 aa8□□□□□ -1.13
USP54-205ENST00000424265 TMSB15BA0A087X1C1 80 aa8□□□□□ -1.13
USP54-205ENST00000424265 A0A0A6YYD4 124 aa8□□□□□ -1.13
USP54-205ENST00000424265 TMEM50AO95807 157 aa8□□□□□ -1.13
USP54-205ENST00000424265 NTF4P34130 210 aa8□□□□□ -1.13
USP54-205ENST00000424265 EFNA4P52798 201 aa8□□□□□ -1.13
USP54-205ENST00000424265 EDA2RQ9HAV5 297 aa8□□□□□ -1.13
USP54-205ENST00000424265 ANAPC10Q9UM13 185 aa8□□□□□ -1.13
USP54-205ENST00000424265 A8MWV9 139 aa8□□□□□ -1.13
USP54-205ENST00000424265 K7ERJ3 54 aa8□□□□□ -1.13
USP54-205ENST00000424265 AMTNQ6UX39 209 aa8□□□□□ -1.13
USP54-205ENST00000424265 ZNF114Q8NC26 417 aa8□□□□□ -1.13
USP54-205ENST00000424265 DLX4Q92988 240 aaPredicted RBP8□□□□□ -1.13
USP54-205ENST00000424265 RPEQ96AT9 228 aa8□□□□□ -1.13
USP54-205ENST00000424265 ZNF256Q9Y2P7 627 aaPredicted RBP8□□□□□ -1.13
USP54-205ENST00000424265 CACNA1GO43497 2377 aa8□□□□□ -1.13
USP54-205ENST00000424265 FOXI3A8MTJ6 420 aaPredicted RBP8□□□□□ -1.13
USP54-205ENST00000424265 FOXA3P55318 350 aaPredicted RBP8□□□□□ -1.13
USP54-205ENST00000424265 ERVK11-1P61568 191 aa8□□□□□ -1.13
USP54-205ENST00000424265 H2BFWTQ7Z2G1 175 aa8□□□□□ -1.13
USP54-205ENST00000424265 A8MWL6 223 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 ATP5LO75964 103 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 VMA21Q3ZAQ7 101 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 CENPWQ5EE01 88 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 RPRMLQ8N4K4 120 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 SLC25A33Q9BSK2 321 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 TM2D2Q9BX73 214 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 SPANXCQ9NY87 97 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 IGHV1-46P01743 117 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 SUB1P53999 127 aaKnown RBP eCLIP7.99□□□□□ -1.13
USP54-205ENST00000424265 ID3Q02535 119 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 ZDHHC16Q969W1 377 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 NMSQ5H8A3 153 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 GAPTQ8N292 157 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 CCL13Q99616 98 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 RNASE7Q9H1E1 156 aaKnown RBP7.99□□□□□ -1.13
USP54-205ENST00000424265 FBXL15Q9H469 300 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 ADAMTS20P59510 1910 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 TRAV8-1A0A0A6YYK1 113 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 ARL14EPLP0DKL9 152 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 RPL7P18124 248 aaKnown RBP7.99□□□□□ -1.13
USP54-205ENST00000424265 GATA4P43694 442 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 ZNF146Q15072 292 aa7.99□□□□□ -1.13
USP54-205ENST00000424265 A0A087WX48 190 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 WIPF1O43516 503 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 RPS16P62249 146 aaKnown RBP7.98□□□□□ -1.13
USP54-205ENST00000424265 ZNF826PQ6ZT77 177 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 FAM168AQ92567 244 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 CACNA1BQ00975 2339 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 FER1L5A0AVI2 2057 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 FREM3P0C091 2139 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 SRRM5B3KS81 715 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 IZUMO4Q1ZYL8 232 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 KRTAP27-1Q3LI81 207 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 RASL11BQ9BPW5 248 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 OSTCQ9NRP0 149 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 SH2D7A6NKC9 451 aaPredicted RBP7.98□□□□□ -1.13
USP54-205ENST00000424265 F8WDY8 70 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 OPRK1P41145 380 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 ZNF488Q96MN9 340 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 C1RLQ9NZP8 487 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 IGLV3-9A0A075B6K5 115 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 IGHV3OR15-7A0A075B7D8 119 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 TRAV8-4A0A0B4J246 113 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 IGKV1-9A0A0C4DH69 117 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 C2orf70A6NJV1 201 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 LRRC75A-AS1Q8N1F1 130 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 ZNF645Q8N7E2 425 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 Q8TCH9 128 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 CHD9Q3L8U1 2897 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 ZNF407Q9C0G0 2248 aa7.98□□□□□ -1.13
USP54-205ENST00000424265 LINC00694P0DN24 101 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 DAZAP2Q15038 168 aaPredicted RBP7.97□□□□□ -1.13
USP54-205ENST00000424265 IDI2-AS1Q9NZ38 188 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms