RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 ASCL4Q6XD76 172 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 REC114Q7Z4M0 266 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 LHFPL4Q7Z7J7 247 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 SUMO2P61956 95 aaKnown RBP8.72□□□□□ -1.01
PTCH1-206ENST00000421141 TBX15Q96SF7 602 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 TMEM250H0YL14 139 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 DKK1O94907 266 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 HOXB4P17483 251 aaPredicted RBP8.72□□□□□ -1.01
PTCH1-206ENST00000421141 NR2C2APQ86WQ0 139 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 ISOC2Q96AB3 205 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 IGKV1D-8A0A087WSZ0 117 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 ATP6V0E1O15342 81 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 IFITM3Q01628 133 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 FER1L6-AS1Q8NA97 138 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 NIT2Q9NQR4 276 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 DCAF16Q9NXF7 216 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 LDLRAD4O15165 306 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 ZNF415Q09FC8 603 aa8.72□□□□□ -1.01
PTCH1-206ENST00000421141 A0A1B0GUT8 65 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 ZNF503-AS2A6NEH8 195 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 TOMM40O96008 361 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 CACNG7P62955 275 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 C10orf55Q5SWW7 151 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 ZNF833PQ6ZTB9 187 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 VN1R17PQ8TDU5 208 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 TMEM158Q8WZ71 300 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 IGKV1-16P04430 117 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 Q8NA96 180 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 IGHV4-30-2A0A087WSY4 118 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 NDPQ00604 133 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 RARRES2Q99969 163 aa8.71□□□□□ -1.01
PTCH1-206ENST00000421141 A0A1B0GW15 77 aa8.71□□□□□ -1.02
PTCH1-206ENST00000421141 MUC21Q5SSG8 566 aa8.71□□□□□ -1.02
PTCH1-206ENST00000421141 OR10AG1Q8NH19 301 aa8.71□□□□□ -1.02
PTCH1-206ENST00000421141 NTF4P34130 210 aa8.71□□□□□ -1.02
PTCH1-206ENST00000421141 IGHV2-70P01814 119 aa8.71□□□□□ -1.02
PTCH1-206ENST00000421141 FAM120AOSQ5T036 256 aa8.71□□□□□ -1.02
PTCH1-206ENST00000421141 LINC00473A8K010 186 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 FHL1Q13642 323 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 FBXL19-AS1Q494R0 122 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 KLF17Q5JT82 389 aaPredicted RBP8.7□□□□□ -1.02
PTCH1-206ENST00000421141 CCDC168Q8NDH2 2452 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 TAS2R60P59551 318 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 KLK15Q9H2R5 256 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 LOXP28300 417 aaPredicted RBP8.7□□□□□ -1.02
PTCH1-206ENST00000421141 SUPT4H1P63272 117 aaKnown RBP8.7□□□□□ -1.02
PTCH1-206ENST00000421141 QRFPP83859 136 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 OR4D5Q8NGN0 318 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 EIF3GO75821 320 aaKnown RBP eCLIP8.7□□□□□ -1.02
PTCH1-206ENST00000421141 C9orf139Q6ZV77 190 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 LINC00477Q96M19 166 aa8.7□□□□□ -1.02
PTCH1-206ENST00000421141 SCO2A0A1W2PP80 73 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 OR11H1Q8NG94 326 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 RPP21Q9H633 154 aaKnown RBP8.69□□□□□ -1.02
PTCH1-206ENST00000421141 SORL1Q92673 2214 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 PMS2P5A8MQ11 134 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 CD300CQ08708 224 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 LINC00311Q8N616 119 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 MRPL18Q9H0U6 180 aaKnown RBP8.69□□□□□ -1.02
PTCH1-206ENST00000421141 LRRK2Q5S007 2527 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 FGF16O43320 207 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 OR10J3Q5JRS4 329 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 RHPN1-AS1Q9BWJ2 59 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 FHITP49789 147 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 OR10D4PQ8NGN7 298 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 EPDR1Q9UM22 224 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 FCN3O75636 299 aa8.69□□□□□ -1.02
PTCH1-206ENST00000421141 C17orf58Q2M2W7 97 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 CXorf65A6NEN9 183 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 LGALS3P17931 250 aaKnown RBP8.68□□□□□ -1.02
PTCH1-206ENST00000421141 WDR86Q86TI4 376 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 RCHY1Q96PM5 261 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 TNRC6BQ9UPQ9 1833 aaKnown RBP8.68□□□□□ -1.02
PTCH1-206ENST00000421141 PSCAO43653 123 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 SOX21Q9Y651 276 aaPredicted RBP8.68□□□□□ -1.02
PTCH1-206ENST00000421141 TLN1Q9Y490 2541 aaKnown RBP8.68□□□□□ -1.02
PTCH1-206ENST00000421141 F2Z2F3 143 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 NDUFS7O75251 213 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 WFDC12Q8WWY7 111 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 TRAV3A0A0B4J244 114 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 IGHV4-61A0A0C4DH41 118 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 H3BRM9 83 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 NRGNQ92686 78 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 TMEM70Q9BUB7 260 aa8.68□□□□□ -1.02
PTCH1-206ENST00000421141 MRPS16Q9Y3D3 137 aaKnown RBP8.68□□□□□ -1.02
PTCH1-206ENST00000421141 PRRC2AP48634 2157 aaKnown RBP8.68□□□□□ -1.02
PTCH1-206ENST00000421141 TMEM238LA0A1B0GVL6 79 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 A6NJY4 79 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 DEFB112Q30KQ8 113 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 LHFPL1Q86WI0 220 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 LINC00862A6NCI5 91 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 AMBPP02760 352 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 ID3Q02535 119 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 C10orf105Q8TEF2 133 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 SCRT1Q9BWW7 348 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 FNDC10F2Z333 226 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 MEIG1Q5JSS6 88 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 SRRM4A7MD48 611 aaKnown RBP8.67□□□□□ -1.02
PTCH1-206ENST00000421141 OVOL3O00110 214 aa8.67□□□□□ -1.02
PTCH1-206ENST00000421141 NDUFB8O95169 186 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms