RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 DOCK11Q5JSL3 2073 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 DSCAML1Q8TD84 2053 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 OR2T8A6NH00 312 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 ZNF253O75346 499 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 CLEC3BP05452 202 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 ELANEP08246 267 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 TEX38Q6PEX7 206 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 TMEM37Q8WXS4 190 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 SFRP2Q96HF1 295 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 Q9H3A6 140 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 OSTCQ9NRP0 149 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 ZFP30Q9Y2G7 519 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 SCO2A0A1W2PP80 73 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 COLCA2A8K830 154 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 C9JQL5 133 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 S100A2P29034 98 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 FAM162BQ5T6X4 162 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 SSX7Q7RTT5 188 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 FAM24BQ8N5W8 94 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 ZNF502Q8TBZ5 544 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 C2CD4CQ8TF44 421 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 TRBV9A0A0B4J1U6 114 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 WI2-2373I1.2A0A1W2PRP0 233 aa6.61□□□□□ -1.35
USP54-203ENST00000418501 ZNF705GA8MUZ8 300 aaPredicted RBP6.61□□□□□ -1.35
USP54-203ENST00000418501 MRPL27Q9P0M9 148 aaKnown RBP6.61□□□□□ -1.35
USP54-203ENST00000418501 YTHDF2Q9Y5A9 579 aaKnown RBP6.61□□□□□ -1.35
USP54-203ENST00000418501 MT-ND6P03923 174 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 RPS20P60866 119 aaKnown RBP6.6□□□□□ -1.35
USP54-203ENST00000418501 CENPWQ5EE01 88 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 OR4B1Q8NGF8 309 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 DPF1Q92782 380 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 SCRT1Q9BWW7 348 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 NIT2Q9NQR4 276 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 YAE1D1Q9NRH1 226 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 IGKV1D-37A0A075B6S9 117 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 NDUFA4O00483 81 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 SNRPEP62304 92 aaKnown RBP6.6□□□□□ -1.35
USP54-203ENST00000418501 DEFB112Q30KQ8 113 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 ZNF491Q8N8L2 437 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 OR4X2Q8NGF9 303 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 FANCD2OSQ96PS1 177 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 IGKV1OR2-108A0A075B7D4 117 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 USF2Q15853 346 aaPredicted RBP6.6□□□□□ -1.35
USP54-203ENST00000418501 TMEM183BQ1AE95 376 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 PPP1R14DQ9NXH3 145 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 DMRT1Q9Y5R6 373 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 SOX21Q9Y651 276 aaPredicted RBP6.6□□□□□ -1.35
USP54-203ENST00000418501 URGCP-MRPS24S4R325 110 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 CHD8Q9HCK8 2581 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 AKAP13Q12802 2813 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 PSMB11A5LHX3 300 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 A8MWL6 223 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 IGKV1-17P01599 117 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 RNF224P0DH78 156 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 MFAP2P55001 183 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 RPL15P61313 204 aaKnown RBP6.6□□□□□ -1.35
USP54-203ENST00000418501 KLK9Q2XQG4 91 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 KLF17Q5JT82 389 aaPredicted RBP6.6□□□□□ -1.35
USP54-203ENST00000418501 KLK9Q9UKQ9 250 aa6.6□□□□□ -1.35
USP54-203ENST00000418501 A0A1W2PPQ1 181 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 SMAD7O15105 426 aaKnown RBP6.59□□□□□ -1.35
USP54-203ENST00000418501 P01737 135 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 PAFAH1B2P68402 229 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 MRGPRG-AS1Q2M3A8 158 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 IBA57Q5T440 356 aaKnown RBP6.59□□□□□ -1.35
USP54-203ENST00000418501 ZNF329Q86UD4 541 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 TRBV24-1A0A075B6N3 115 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 ZNF320A2RRD8 509 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 PYYP10082 97 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 LDLRAD2Q5SZI1 272 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 LINC01551Q86U37 167 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 GBGT1Q8N5D6 347 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 NRGNQ92686 78 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 ISOC2Q96AB3 205 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 FXYD5Q96DB9 178 aa6.59□□□□□ -1.35
USP54-203ENST00000418501 TRAV5A0A0B4J249 113 aa6.59□□□□□ -1.36
USP54-203ENST00000418501 ISLRO14498 428 aa6.59□□□□□ -1.36
USP54-203ENST00000418501 Q6YL49 198 aa6.59□□□□□ -1.36
USP54-203ENST00000418501 ZFP82Q8N141 532 aa6.59□□□□□ -1.36
USP54-203ENST00000418501 HSPB9Q9BQS6 159 aa6.59□□□□□ -1.36
USP54-203ENST00000418501 IL36BQ9NZH7 164 aa6.59□□□□□ -1.36
USP54-203ENST00000418501 IER3P46695 156 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 FOXL1Q12952 345 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 FOXE3Q13461 319 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 ANKRD39Q53RE8 183 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 C1QL4Q86Z23 238 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 FAM167A-AS1Q96KT0 104 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 SRD5A3Q9H8P0 318 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 PEF1Q9UBV8 284 aaKnown RBP6.58□□□□□ -1.36
USP54-203ENST00000418501 COL8A1P27658 744 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 RPL11P62913 178 aaKnown RBP6.58□□□□□ -1.36
USP54-203ENST00000418501 Q6AWC8 147 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 DNAH14Q0VDD8 3507 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 TRBV19A0A075B6N1 114 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 TCRAP04437 139 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 NDPQ00604 133 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 PATE2Q6UY27 113 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 FRZBQ92765 325 aa6.58□□□□□ -1.36
USP54-203ENST00000418501 MRPL53Q96EL3 112 aaKnown RBP6.58□□□□□ -1.36
USP54-203ENST00000418501 DMDP11532 3685 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms