RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 SIX2Q9NPC8 291 aa2.74□□□□□ -1.97
SF3B1-203ENST00000414174 TNFRSF19Q9NS68 423 aa2.74□□□□□ -1.97
SF3B1-203ENST00000414174 KLK5Q9Y337 293 aaPredicted RBP2.74□□□□□ -1.97
SF3B1-203ENST00000414174 CHD3Q12873 2000 aaKnown RBP2.74□□□□□ -1.97
SF3B1-203ENST00000414174 CKAP5Q14008 2032 aa2.74□□□□□ -1.97
SF3B1-203ENST00000414174 KIF13AQ9H1H9 1805 aa2.74□□□□□ -1.97
SF3B1-203ENST00000414174 KIAA0556O60303 1618 aa2.74□□□□□ -1.97
SF3B1-203ENST00000414174 NESP48681 1621 aa2.74□□□□□ -1.97
SF3B1-203ENST00000414174 UBR2Q8IWV8 1755 aa2.74□□□□□ -1.97
SF3B1-203ENST00000414174 VWA8A3KMH1 1905 aa2.74□□□□□ -1.97
SF3B1-203ENST00000414174 DENND4CQ5VZ89 1909 aa2.74□□□□□ -1.97
SF3B1-203ENST00000414174 CACNA1IQ9P0X4 2223 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 TET3O43151 1660 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 ZNF142P52746 1687 aaPredicted RBP2.73□□□□□ -1.97
SF3B1-203ENST00000414174 SBF2Q86WG5 1849 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 ADCY10Q96PN6 1610 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 A0A0D9SEW6 157 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 A0A0D9SFI3 127 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 NAP1L6A6NFF2 107 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 ZFP92A6NM28 416 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 COX7A2LO14548 114 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 TCL1BO95988 128 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 CSRP3P50461 194 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 HBBP68871 147 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 ZC2HC1BQ5TFG8 222 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 RUSC1-AS1Q66K80 236 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 FP248Q71RG6 208 aaPredicted RBP2.73□□□□□ -1.97
SF3B1-203ENST00000414174 SH2D6Q7Z4S9 175 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 SPATA12Q7Z6I5 190 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 PRNTQ86SH4 94 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 Q8N2B8 174 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 ZNF491Q8N8L2 437 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 MORN4Q8NDC4 146 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 CMTM2Q8TAZ6 248 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 GTSF1Q8WW33 167 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 H1FXQ92522 213 aaKnown RBP2.73□□□□□ -1.97
SF3B1-203ENST00000414174 LINC01600Q96MT4 127 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 FAM218AQ96MZ4 157 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 HDHD3Q9BSH5 251 aaPredicted RBP2.73□□□□□ -1.97
SF3B1-203ENST00000414174 TMEM204Q9BSN7 226 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 CHAC1Q9BUX1 264 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 FGFBP2Q9BYJ0 223 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 ZNF286AQ9HBT8 521 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 SDF2L1Q9HCN8 221 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 LSM2Q9Y333 95 aaKnown RBP2.73□□□□□ -1.97
SF3B1-203ENST00000414174 MOB4Q9Y3A3 225 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 LINC00588Q9Y4M8 146 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 PPLO60437 1756 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 SCN11AQ9UI33 1791 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 ADGRB1O14514 1584 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 NWD1Q149M9 1564 aa2.73□□□□□ -1.97
SF3B1-203ENST00000414174 MYO3AQ8NEV4 1616 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 NCKAP5O14513 1909 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 TCHHQ07283 1943 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 IGHV3OR16-13A0A075B7E8 117 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 FXYD6-FXYD2A0A087WZ82 144 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 TRBV5-3A0A0A0MS03 114 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 IGLV9-49A0A0B4J1Y8 123 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 IGKV1D-43A0A0B4J1Z2 117 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 IGHV1-69DA0A0B4J2H0 117 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 KLF18A0A0U1RQI7 1052 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 TMEM256-PLSCR3K7ERE1 68 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 SDCBPO00560 298 aaPredicted RBP2.72□□□□□ -1.97
SF3B1-203ENST00000414174 NXPH4O95158 308 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 SOD1P00441 154 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 IGKCP01834 107 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 HSPB1P04792 205 aaKnown RBP2.72□□□□□ -1.97
SF3B1-203ENST00000414174 ZNF883P0CG24 379 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 BRCA1P38398 1863 aaKnown RBP2.72□□□□□ -1.97
SF3B1-203ENST00000414174 NCBP2P52298 156 aaKnown RBP eCLIP2.72□□□□□ -1.973e-13■■□□□ 12.1
SF3B1-203ENST00000414174 BRWD1-AS2P59051 145 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 SNRPD3P62318 126 aaKnown RBP2.72□□□□□ -1.97
SF3B1-203ENST00000414174 RPS21P63220 83 aaKnown RBP2.72□□□□□ -1.97
SF3B1-203ENST00000414174 HOXA4Q00056 320 aaPredicted RBP2.72□□□□□ -1.97
SF3B1-203ENST00000414174 MORN5Q5VZ52 161 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 LAIR2Q6ISS4 152 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 GFRALQ6UXV0 394 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 SUPT6HQ7KZ85 1726 aaKnown RBP2.72□□□□□ -1.97
SF3B1-203ENST00000414174 LINC00596Q86U02 117 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 C17orf82Q86X59 251 aaPredicted RBP2.72□□□□□ -1.97
SF3B1-203ENST00000414174 AMN1Q8IY45 258 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 ZNF101Q8IZC7 436 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 STAG3L4Q8TBR4 150 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 FAM57AQ8TBR7 257 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 TVP23CQ96ET8 276 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 ABHD14BQ96IU4 210 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 DSCR8Q96T75 97 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 TIMM17AQ99595 171 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 RHNO1Q9BSD3 238 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 CHCHD5Q9BSY4 110 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 FXYD6Q9H0Q3 95 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 C6orf106Q9H6K1 298 aaPredicted RBP2.72□□□□□ -1.97
SF3B1-203ENST00000414174 SLC25A22Q9H936 323 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 ZNF702PQ9H963 129 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 TP73-AS1Q9UF72 201 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 IFT172Q9UG01 1749 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 HHLA3Q9XRX5 114 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 MROH2AA6NES4 1674 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 THSD7AQ9UPZ6 1657 aa2.72□□□□□ -1.97
SF3B1-203ENST00000414174 MEGF6O75095 1541 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms