RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 MIR17HGQ75NE6 70 aa8.71□□□□□ -1.02
LINC00539-201ENST00000411525 RNF152Q8N8N0 203 aa8.71□□□□□ -1.02
LINC00539-201ENST00000411525 Q8WTZ3 238 aa8.71□□□□□ -1.02
LINC00539-201ENST00000411525 RNF125Q96EQ8 232 aa8.71□□□□□ -1.02
LINC00539-201ENST00000411525 CHRDL1Q9BU40 450 aa8.71□□□□□ -1.02
LINC00539-201ENST00000411525 GNB4Q9HAV0 340 aa8.71□□□□□ -1.02
LINC00539-201ENST00000411525 DNAJC4Q9NNZ3 241 aa8.71□□□□□ -1.02
LINC00539-201ENST00000411525 CMYA5Q8N3K9 4069 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.7□□□□□ -1.02
LINC00539-201ENST00000411525 WI2-2373I1.2A0A1W2PRP0 233 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 IGHV3-11P01762 117 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 IL4P05112 153 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 CLEC3BP05452 202 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 TAS2R45P59539 299 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 RELQ04864 619 aaPredicted RBP8.7□□□□□ -1.02
LINC00539-201ENST00000411525 FAM209BQ5JX69 171 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 ZNF343Q6P1L6 599 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 PATE2Q6UY27 113 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 EIF4E3Q8N5X7 224 aaKnown RBP8.7□□□□□ -1.02
LINC00539-201ENST00000411525 ZNF491Q8N8L2 437 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 LINC01006Q8NI28 216 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 MYOZ3Q8TDC0 251 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 FAM210AQ96ND0 272 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 CITED4Q96RK1 184 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 PBDC1Q9BVG4 233 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 C16orf95Q9H693 158 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 TECRQ9NZ01 308 aaKnown RBP8.7□□□□□ -1.02
LINC00539-201ENST00000411525 HIGD1AQ9Y241 93 aa8.7□□□□□ -1.02
LINC00539-201ENST00000411525 PPP5D1E7EU14 171 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 CXorf1O96002 111 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 IFNA1P01562 189 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 RPLP1P05386 114 aaKnown RBP8.69□□□□□ -1.02
LINC00539-201ENST00000411525 ARL14EPLP0DKL9 152 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 C8orf88P0DMB2 117 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 ARL3P36405 182 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 PROK1P58294 105 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 CCL20P78556 96 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 KHDC3LQ587J8 217 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 TOR2AQ5JU69 321 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 UQCC3Q6UW78 93 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 LINC00305Q7Z4B0 112 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 IQCF2Q8IXL9 164 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 KLHDC1Q8N7A1 406 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 OR4X2Q8NGF9 303 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 ZNF414Q96IQ9 312 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 UHRF2Q96PU4 802 aa8.69□□□□□ -1.02
LINC00539-201ENST00000411525 PUS1Q9Y606 427 aaKnown RBP eCLIP8.69□□□□□ -1.02
LINC00539-201ENST00000411525 TRBV12-3P01733 135 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 PSMB3P49720 205 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 PPT1P50897 306 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 KIAA0141Q14154 515 aaPredicted RBP8.68□□□□□ -1.02
LINC00539-201ENST00000411525 USF2Q15853 346 aaPredicted RBP8.68□□□□□ -1.02
LINC00539-201ENST00000411525 GUK1Q16774 197 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 MORN5Q5VZ52 161 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 PQLC2Q6ZP29 291 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 S100A7AQ86SG5 101 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 OR5AU1Q8NGC0 362 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 FAM167A-AS1Q96KT0 104 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 SLC25A2Q9BXI2 301 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 SLC25A39Q9BZJ4 359 aaPredicted RBP8.68□□□□□ -1.02
LINC00539-201ENST00000411525 ZFAND3Q9H8U3 227 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 MANBALQ9NQG1 85 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 MRPL27Q9P0M9 148 aaKnown RBP8.68□□□□□ -1.02
LINC00539-201ENST00000411525 GNG13Q9P2W3 67 aa8.68□□□□□ -1.02
LINC00539-201ENST00000411525 TRAV5A0A0B4J249 113 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 LOC102723971A0A1B0GUV8 181 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 ANKRD34BA5PLL1 514 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 H3BRN7 92 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 BMPR1BO00238 502 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 OR7C2O60412 319 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 LGALS1P09382 135 aaKnown RBP8.67□□□□□ -1.02
LINC00539-201ENST00000411525 BCL2P10415 239 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 GCHFRP30047 84 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 PMS2P11Q13670 270 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 TOMM20LQ6UXN7 152 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 UBE2E2Q96LR5 201 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 SHANK2-AS3Q9BTD1 123 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 SCRT1Q9BWW7 348 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 TMPRSS5Q9H3S3 457 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 TMEM231Q9H6L2 316 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 PEF1Q9UBV8 284 aaKnown RBP8.67□□□□□ -1.02
LINC00539-201ENST00000411525 RABAC1Q9UI14 185 aa8.67□□□□□ -1.02
LINC00539-201ENST00000411525 IGHV3-35A0A0C4DH35 117 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 RBFOX3A6NFN3 312 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 I3L521 148 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 GGCTO75223 188 aaKnown RBP8.66□□□□□ -1.02
LINC00539-201ENST00000411525 S100A7P31151 101 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 TAGLN2P37802 199 aaKnown RBP8.66□□□□□ -1.02
LINC00539-201ENST00000411525 SRSF3P84103 164 aaKnown RBP8.66□□□□□ -1.02
LINC00539-201ENST00000411525 PEA15Q15121 130 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 HAGHQ16775 308 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 ZNF506Q5JVG8 444 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 STXBP6Q8NFX7 210 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 WIPF2Q8TF74 440 aaPredicted RBP8.66□□□□□ -1.02
LINC00539-201ENST00000411525 ZNF503Q96F45 646 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 OR5B12Q96R08 314 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 EIF5A2Q9GZV4 153 aaKnown RBP8.66□□□□□ -1.02
LINC00539-201ENST00000411525 TREM1Q9NP99 234 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 TMEM167BQ9NRX6 74 aa8.66□□□□□ -1.02
LINC00539-201ENST00000411525 PRKDCP78527 4128 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms