RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PYGO2Q9BRQ0 406 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 C16orf95Q9H693 158 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 PSMB11A5LHX3 300 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 AP4M1O00189 453 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 PPP1R2P9O14990 202 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 NDUFB4O95168 129 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 PFN1P07737 140 aaKnown RBP10.51□□□□□ -0.73
LIMS1-204ENST00000409441 C8orf88P0DMB2 117 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 EGR2P11161 476 aaPredicted RBP10.51□□□□□ -0.73
LIMS1-204ENST00000409441 NDPQ00604 133 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 MLANAQ16655 118 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 TMEM95Q3KNT9 176 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 LINC01006Q8NI28 216 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 ARPC1AQ92747 370 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 FAM103A1Q9BTL3 118 aaKnown RBP10.51□□□□□ -0.73
LIMS1-204ENST00000409441 FNDC4Q9H6D8 234 aaPredicted RBP10.51□□□□□ -0.73
LIMS1-204ENST00000409441 LINC00527Q9UJ94 153 aa10.51□□□□□ -0.73
LIMS1-204ENST00000409441 YTHDF2Q9Y5A9 579 aaKnown RBP10.51□□□□□ -0.73
LIMS1-204ENST00000409441 ATP6V0E1O15342 81 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 PLXNB1O43157 2135 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 IGF1P05019 195 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 GALR1P47211 349 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 AKR1D1P51857 326 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 KRTAP24-1Q3LI83 254 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 LINC01551Q86U37 167 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 OR51G1Q8NGK1 321 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 OR1P1Q8NH06 330 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 SRSF12Q8WXF0 261 aaKnown RBP10.5□□□□□ -0.73
LIMS1-204ENST00000409441 NOL4LQ96MY1 436 aaPredicted RBP10.5□□□□□ -0.73
LIMS1-204ENST00000409441 DNAJC4Q9NNZ3 241 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 SERTAD4Q9NUC0 356 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 LY96Q9Y6Y9 160 aa10.5□□□□□ -0.73
LIMS1-204ENST00000409441 ATRQ13535 2644 aa10.49□□□□□ -0.73
LIMS1-204ENST00000409441 RPL35P42766 123 aaKnown RBP10.49□□□□□ -0.73
LIMS1-204ENST00000409441 KIAA0141Q14154 515 aaPredicted RBP10.49□□□□□ -0.73
LIMS1-204ENST00000409441 SGMS2Q8NHU3 365 aa10.49□□□□□ -0.73
LIMS1-204ENST00000409441 NPIPB3Q92617 1050 aa10.49□□□□□ -0.73
LIMS1-204ENST00000409441 BTF3L4Q96K17 158 aa10.49□□□□□ -0.73
LIMS1-204ENST00000409441 IMMP2LQ96T52 175 aa10.49□□□□□ -0.73
LIMS1-204ENST00000409441 IGKV1D-37A0A075B6S9 117 aa10.48□□□□□ -0.73
LIMS1-204ENST00000409441 SCO2A0A1W2PP80 73 aa10.48□□□□□ -0.73
LIMS1-204ENST00000409441 CLPSL1A2RUU4 121 aa10.48□□□□□ -0.73
LIMS1-204ENST00000409441 TEX22C9J3V5 150 aa10.48□□□□□ -0.73
LIMS1-204ENST00000409441 C9JCJ5 164 aa10.48□□□□□ -0.73
LIMS1-204ENST00000409441 G3V318 75 aa10.48□□□□□ -0.73
LIMS1-204ENST00000409441 S100A8P05109 93 aa10.48□□□□□ -0.73
LIMS1-204ENST00000409441 GATA2P23769 480 aaPredicted RBP10.48□□□□□ -0.73
LIMS1-204ENST00000409441 TMEM37Q8WXS4 190 aa10.48□□□□□ -0.73
LIMS1-204ENST00000409441 TRGV9Q99603 122 aa10.48□□□□□ -0.73
LIMS1-204ENST00000409441 F11RQ9Y624 299 aaKnown RBP10.48□□□□□ -0.73
LIMS1-204ENST00000409441 TRAV41A0A0B4J266 112 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 A0A1W2PRE2 83 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 COX7A2P2O60397 106 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 OR7C2O60412 319 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 REG1AP05451 166 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 APELAP0DMC3 54 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 FABP9Q0Z7S8 132 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 C10orf113Q5VZT2 155 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 KCNIP4Q6PIL6 250 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 TMEM116Q8NCL8 245 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 ZNF503Q96F45 646 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 TCEAL7Q9BRU2 100 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 DERL1Q9BUN8 251 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 SRD5A3Q9H8P0 318 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 RNF114Q9Y508 228 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 ELOA3CA0A087WX78 387 aaPredicted RBP10.47□□□□□ -0.73
LIMS1-204ENST00000409441 TMEM89A2RUT3 159 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 GGCTO75223 188 aaKnown RBP10.47□□□□□ -0.73
LIMS1-204ENST00000409441 FOXL1Q12952 345 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 ECSCRQ19T08 205 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 UNQ5815/PRO19632Q6UWF5 114 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 TMEM158Q8WZ71 300 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 MISP3Q96FF7 219 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 FAM167A-AS1Q96KT0 104 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 WNT10AQ9GZT5 417 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 ZNF580Q9UK33 172 aa10.47□□□□□ -0.73
LIMS1-204ENST00000409441 A0A1B0GUS0 222 aa10.46□□□□□ -0.74
LIMS1-204ENST00000409441 CRIP2P52943 208 aaPredicted RBP10.46□□□□□ -0.74
LIMS1-204ENST00000409441 MFAP2P55001 183 aa10.46□□□□□ -0.74
LIMS1-204ENST00000409441 ASPHD1Q5U4P2 390 aa10.46□□□□□ -0.74
LIMS1-204ENST00000409441 ZNF329Q86UD4 541 aa10.46□□□□□ -0.74
LIMS1-204ENST00000409441 OR5T1Q8NG75 326 aa10.46□□□□□ -0.74
LIMS1-204ENST00000409441 OR1L6Q8NGR2 347 aa10.46□□□□□ -0.74
LIMS1-204ENST00000409441 OR4X1Q8NH49 305 aa10.46□□□□□ -0.74
LIMS1-204ENST00000409441 TMEM68Q96MH6 324 aa10.46□□□□□ -0.74
LIMS1-204ENST00000409441 SLC25A2Q9BXI2 301 aa10.46□□□□□ -0.74
LIMS1-204ENST00000409441 TRBV20OR9-2A0A075B6H5 130 aa10.45□□□□□ -0.74
LIMS1-204ENST00000409441 TRGC2P03986 189 aa10.45□□□□□ -0.74
LIMS1-204ENST00000409441 TYMSP04818 313 aa10.45□□□□□ -0.74
LIMS1-204ENST00000409441 PPIFP30405 207 aaKnown RBP10.45□□□□□ -0.74
LIMS1-204ENST00000409441 RIPPLY3P57055 190 aa10.45□□□□□ -0.74
LIMS1-204ENST00000409441 C19orf54Q5BKX5 351 aa10.45□□□□□ -0.74
LIMS1-204ENST00000409441 STXBP6Q8NFX7 210 aa10.45□□□□□ -0.74
LIMS1-204ENST00000409441 SFRP2Q96HF1 295 aa10.45□□□□□ -0.74
LIMS1-204ENST00000409441 MRPL36Q9P0J6 103 aaKnown RBP10.45□□□□□ -0.74
LIMS1-204ENST00000409441 PPP5D1E7EU14 171 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 LCE2BO14633 110 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST1H2BKO60814 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HIST1H2BJP06899 126 aa10.44□□□□□ -0.74
LIMS1-204ENST00000409441 HOXA5P20719 270 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms