RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 GNPNAT1Q96EK6 184 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-203ENST00000409225 CACNG5Q9UF02 275 aa11.54□□□□□ -0.56
CHMP3-203ENST00000409225 ZFP92A6NM28 416 aa11.53□□□□□ -0.56
CHMP3-203ENST00000409225 CNN1P51911 297 aaKnown RBP11.53□□□□□ -0.56
CHMP3-203ENST00000409225 LINC00315P59091 139 aa11.53□□□□□ -0.56
CHMP3-203ENST00000409225 B2MP61769 119 aa11.53□□□□□ -0.56
CHMP3-203ENST00000409225 OR5I1Q13606 314 aa11.53□□□□□ -0.56
CHMP3-203ENST00000409225 KLF9Q13886 244 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-203ENST00000409225 FAM219AQ8IW50 185 aa11.53□□□□□ -0.56
CHMP3-203ENST00000409225 VCX3BQ9H321 246 aa11.53□□□□□ -0.56
CHMP3-203ENST00000409225 PGPEP1Q9NXJ5 209 aa11.53□□□□□ -0.56
CHMP3-203ENST00000409225 UBR4Q5T4S7 5183 aa11.53□□□□□ -0.56
CHMP3-203ENST00000409225 TRAV12-2A0A075B6T6 113 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 TRAV26-1A0A087WT03 109 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 A0A0J9YY99 117 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 SMR3BP02814 79 aaPredicted RBP11.52□□□□□ -0.57
CHMP3-203ENST00000409225 ESRGQ1W209 222 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 RNASE12Q5GAN4 147 aaKnown RBP11.52□□□□□ -0.57
CHMP3-203ENST00000409225 NMSQ5H8A3 153 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 SAMD13Q5VXD3 122 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 NOXA1Q86UR1 476 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 LHFPL1Q86WI0 220 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 CCDC71LQ8N9Z2 235 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 LINC01587Q99440 93 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 UPK3BQ9BT76 320 aa11.52□□□□□ -0.57
CHMP3-203ENST00000409225 IGKV1D-37A0A075B6S9 117 aa11.51□□□□□ -0.57
CHMP3-203ENST00000409225 DUSP14O95147 198 aaKnown RBP11.51□□□□□ -0.57
CHMP3-203ENST00000409225 HTN1P15515 57 aa11.51□□□□□ -0.57
CHMP3-203ENST00000409225 RPS19P39019 145 aaKnown RBP11.51□□□□□ -0.57
CHMP3-203ENST00000409225 MEOX2P50222 304 aa11.51□□□□□ -0.57
CHMP3-203ENST00000409225 OR2F1Q13607 317 aa11.51□□□□□ -0.57
CHMP3-203ENST00000409225 MEF2DQ14814 521 aa11.51□□□□□ -0.57
CHMP3-203ENST00000409225 GPR141Q7Z602 305 aa11.51□□□□□ -0.57
CHMP3-203ENST00000409225 ARRDC1Q8N5I2 433 aa11.51□□□□□ -0.57
CHMP3-203ENST00000409225 LHFPL5Q8TAF8 219 aa11.51□□□□□ -0.57
CHMP3-203ENST00000409225 MRPS16Q9Y3D3 137 aaKnown RBP11.51□□□□□ -0.57
CHMP3-203ENST00000409225 SMIM31A0A1B0GVY4 71 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 J3QL48 77 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 EREGO14944 169 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 OR5AC1P0C628 307 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 RNASE10Q5GAN6 216 aaKnown RBP11.5□□□□□ -0.57
CHMP3-203ENST00000409225 IGFL4Q6B9Z1 124 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 Q6ZRN7 208 aaPredicted RBP11.5□□□□□ -0.57
CHMP3-203ENST00000409225 OR13C8Q8NGS7 320 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 ZFAND1Q8TCF1 268 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 RXFP4Q8TDU9 374 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 RSG1Q9BU20 258 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 SLC25A39Q9BZJ4 359 aaPredicted RBP11.5□□□□□ -0.57
CHMP3-203ENST00000409225 TMEM222Q9H0R3 208 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 SLC25A32Q9H2D1 315 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 NOP10Q9NPE3 64 aaKnown RBP11.5□□□□□ -0.57
CHMP3-203ENST00000409225 RAB26Q9ULW5 256 aa11.5□□□□□ -0.57
CHMP3-203ENST00000409225 TIMM8BQ9Y5J9 83 aaPredicted RBP11.5□□□□□ -0.57
CHMP3-203ENST00000409225 SRRM2Q9UQ35 2752 aaKnown RBP11.5□□□□□ -0.57
CHMP3-203ENST00000409225 CDS2O95674 445 aa11.49□□□□□ -0.57
CHMP3-203ENST00000409225 M6PRP20645 277 aa11.49□□□□□ -0.57
CHMP3-203ENST00000409225 GALR1P47211 349 aa11.49□□□□□ -0.57
CHMP3-203ENST00000409225 KRTAP10-1P60331 282 aa11.49□□□□□ -0.57
CHMP3-203ENST00000409225 NEDD8Q15843 81 aa11.49□□□□□ -0.57
CHMP3-203ENST00000409225 CDPF1Q6NVV7 123 aa11.49□□□□□ -0.57
CHMP3-203ENST00000409225 SELENOHQ8IZQ5 122 aaKnown RBP11.49□□□□□ -0.57
CHMP3-203ENST00000409225 C16orf74Q96GX8 76 aa11.49□□□□□ -0.57
CHMP3-203ENST00000409225 C17orf77Q96MU5 243 aa11.49□□□□□ -0.57
CHMP3-203ENST00000409225 SLC25A22Q9H936 323 aa11.49□□□□□ -0.57
CHMP3-203ENST00000409225 SNRPGP15A8MWD9 76 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 BOLA2-SMG1P6H3BVE0 249 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 B3GALNT1O75752 331 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 CD3DP04234 171 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 ZNF182P17025 639 aaPredicted RBP11.48□□□□□ -0.57
CHMP3-203ENST00000409225 TAS2R60P59551 318 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 ERVFC1-1P60608 527 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 GAMTQ14353 236 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 OR10J6PQ8NGY7 276 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 RBPMSQ93062 196 aaKnown RBP11.48□□□□□ -0.57
CHMP3-203ENST00000409225 ZNF503Q96F45 646 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 SLC35E1Q96K37 410 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 COMMD3Q9UBI1 195 aa11.48□□□□□ -0.57
CHMP3-203ENST00000409225 GABARAPH6UMI1 98 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 ZNF701M0R085 212 aaPredicted RBP11.47□□□□□ -0.57
CHMP3-203ENST00000409225 GABARAPO95166 117 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 IFNA5P01569 189 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 FABP1P07148 127 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 LSM3P62310 102 aaKnown RBP11.47□□□□□ -0.57
CHMP3-203ENST00000409225 SCGB2B2Q4G0G5 96 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 TMEM144Q7Z5S9 345 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 LGI3Q8N145 548 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 RNF182Q8N6D2 247 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 MARCH1Q8TCQ1 289 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 GLYATL2Q8WU03 294 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 U3KQ87 197 aa11.47□□□□□ -0.57
CHMP3-203ENST00000409225 TEX13DA0A0J9YY54 714 aaPredicted RBP11.46□□□□□ -0.57
CHMP3-203ENST00000409225 TNFAIP8O95379 198 aa11.46□□□□□ -0.57
CHMP3-203ENST00000409225 HOXA5P20719 270 aa11.46□□□□□ -0.57
CHMP3-203ENST00000409225 ICAM4Q14773 271 aa11.46□□□□□ -0.57
CHMP3-203ENST00000409225 TMEM268Q5VZI3 342 aa11.46□□□□□ -0.57
CHMP3-203ENST00000409225 TMEM256Q8N2U0 113 aa11.46□□□□□ -0.57
CHMP3-203ENST00000409225 OR4D10Q8NGI6 311 aa11.46□□□□□ -0.57
CHMP3-203ENST00000409225 TERB2Q8NHR7 220 aa11.46□□□□□ -0.57
CHMP3-203ENST00000409225 TRAV8-2A0A0B4J237 113 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms