RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 LRRK2Q5S007 2527 aa11.84□□□□□ -0.51
GPC3-202ENST00000394299 PEX7O00628 323 aa11.84□□□□□ -0.51
GPC3-202ENST00000394299 SLC25A5P05141 298 aaKnown RBP11.84□□□□□ -0.51
GPC3-202ENST00000394299 FOSL1P15407 271 aa11.84□□□□□ -0.51
GPC3-202ENST00000394299 CDX1P47902 265 aaPredicted RBP11.84□□□□□ -0.51
GPC3-202ENST00000394299 TTC9CQ8N5M4 171 aa11.84□□□□□ -0.51
GPC3-202ENST00000394299 MRPL27Q9P0M9 148 aaKnown RBP11.84□□□□□ -0.51
GPC3-202ENST00000394299 IGHV3-35A0A0C4DH35 117 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 NPIPB5A8MRT5 1133 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 CA1P00915 261 aaPredicted RBP11.83□□□□□ -0.52
GPC3-202ENST00000394299 S100A8P05109 93 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 IL4P05112 153 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 S100A9P06702 114 aaKnown RBP11.83□□□□□ -0.52
GPC3-202ENST00000394299 PAX8Q06710 450 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 ZNF491Q8N8L2 437 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 PIMREGQ9BSJ6 248 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 ZNF586Q9NXT0 402 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 LY96Q9Y6Y9 160 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 IGHV3OR16-8A0A075B7F1 116 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 A1L4Q6 167 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 GNG7O60262 68 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 SLC35B1P78383 322 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 ECSCRQ19T08 205 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 IL36BQ9NZH7 164 aa11.83□□□□□ -0.52
GPC3-202ENST00000394299 G3V318 75 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 GCGP01275 180 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 TYMSP04818 313 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 TCL1AP56279 114 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 RPL15P61313 204 aaKnown RBP11.82□□□□□ -0.52
GPC3-202ENST00000394299 SRSF1Q07955 248 aaKnown RBP eCLIP11.82□□□□□ -0.525e-7■■■■■ 29.3
GPC3-202ENST00000394299 Q56UQ5 140 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 EXOC3-AS1Q8N2X6 119 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 TMUB1Q9BVT8 246 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 EPDR1Q9UM22 224 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 TRAV40A0A0B4J280 105 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 OR2T8A6NH00 312 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 TGOLN2O43493 480 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 USF2Q15853 346 aaPredicted RBP11.82□□□□□ -0.52
GPC3-202ENST00000394299 ACTL10Q5JWF8 245 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 Q71RC1 249 aaPredicted RBP11.82□□□□□ -0.52
GPC3-202ENST00000394299 BAGE2Q86Y30 109 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 OR8I2Q8N0Y5 310 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 HIST3H2BBQ8N257 126 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 IMMP2LQ96T52 175 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 Q9H3A6 140 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 SERTAD4Q9NUC0 356 aa11.82□□□□□ -0.52
GPC3-202ENST00000394299 VWC2LB2RUY7 222 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 ATP6V0E1O15342 81 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 IGHV4-38-2P0DP08 117 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 FCGR2BP31994 310 aaPredicted RBP11.81□□□□□ -0.52
GPC3-202ENST00000394299 BRS3P32247 399 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 CNN1P51911 297 aaKnown RBP11.81□□□□□ -0.52
GPC3-202ENST00000394299 STXBP6Q8NFX7 210 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 LINC00527Q9UJ94 153 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 CDC42EP3Q9UKI2 254 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 TRAPPC1Q9Y5R8 145 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 MFAP4P55083 255 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 PRR27Q6MZM9 219 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 CLEC2AQ6UVW9 174 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 UNQ5815/PRO19632Q6UWF5 114 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 OR1L6Q8NGR2 347 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 RNF125Q96EQ8 232 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 ASCL2Q99929 193 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 C21orf62Q9NYP8 219 aa11.81□□□□□ -0.52
GPC3-202ENST00000394299 A0A1B0GUS0 222 aa11.8□□□□□ -0.52
GPC3-202ENST00000394299 HIST1H1BP16401 226 aaKnown RBP11.8□□□□□ -0.52
GPC3-202ENST00000394299 CBLN1P23435 193 aa11.8□□□□□ -0.52
GPC3-202ENST00000394299 IBA57Q5T440 356 aaKnown RBP11.8□□□□□ -0.52
GPC3-202ENST00000394299 CHRDL1Q9BU40 450 aa11.8□□□□□ -0.52
GPC3-202ENST00000394299 C1RLQ9NZP8 487 aa11.8□□□□□ -0.52
GPC3-202ENST00000394299 FBXL7Q9UJT9 491 aa11.8□□□□□ -0.52
GPC3-202ENST00000394299 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.8□□□□□ -0.522e-24■■■■□ 21.2
GPC3-202ENST00000394299 USP9YO00507 2555 aaPredicted RBP11.8□□□□□ -0.52
GPC3-202ENST00000394299 GATCO43716 136 aaKnown RBP11.79□□□□□ -0.52
GPC3-202ENST00000394299 TOMM40O96008 361 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 HLA-DRB1P01911 266 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 ZNF843Q8N446 348 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 OR10D4PQ8NGN7 298 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 POLR3KQ9Y2Y1 108 aaPredicted RBP11.79□□□□□ -0.52
GPC3-202ENST00000394299 TRAV8-1A0A0A6YYK1 113 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 XKRY2A2RUG3 117 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 FABP4P15090 132 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 TAS2R60P59551 318 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 RPEL1Q2QD12 228 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 PIFOQ8TCI5 191 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 SHANK2-AS3Q9BTD1 123 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 ZANQ9Y493 2812 aa11.79□□□□□ -0.52
GPC3-202ENST00000394299 IGHV1-69DA0A0B4J2H0 117 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 WI2-2373I1.2A0A1W2PRP0 233 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 IGHV1-69P01742 117 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 CDPF1Q6NVV7 123 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 MS4A10Q96PG2 267 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 GAR1Q9NY12 217 aaKnown RBP11.78□□□□□ -0.52
GPC3-202ENST00000394299 CSPG4Q6UVK1 2322 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 H3BRN7 92 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 CTSGP08311 255 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 LINC00322Q6ZN03 302 aaPredicted RBP11.78□□□□□ -0.52
GPC3-202ENST00000394299 SPOCK3Q9BQ16 436 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 OSTCQ9NRP0 149 aa11.78□□□□□ -0.52
GPC3-202ENST00000394299 ZNF705GA8MUZ8 300 aaPredicted RBP11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms