RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 KHDC3LQ587J8 217 aa20.72■□□□□ 0.91
MSX1-201ENST00000382723 ZNF343Q6P1L6 599 aa20.72■□□□□ 0.91
MSX1-201ENST00000382723 UQCC3Q6UW78 93 aa20.72■□□□□ 0.91
MSX1-201ENST00000382723 KLHDC1Q8N7A1 406 aa20.72■□□□□ 0.91
MSX1-201ENST00000382723 ZNF414Q96IQ9 312 aa20.72■□□□□ 0.91
MSX1-201ENST00000382723 KIAA0141Q14154 515 aaPredicted RBP20.72■□□□□ 0.91
MSX1-201ENST00000382723 LEMD1Q68G75 181 aa20.72■□□□□ 0.91
MSX1-201ENST00000382723 OR5AU1Q8NGC0 362 aa20.72■□□□□ 0.91
MSX1-201ENST00000382723 GCHFRP30047 84 aa20.71■□□□□ 0.91
MSX1-201ENST00000382723 TOMM20LQ6UXN7 152 aa20.71■□□□□ 0.91
MSX1-201ENST00000382723 FAM167A-AS1Q96KT0 104 aa20.71■□□□□ 0.91
MSX1-201ENST00000382723 SLC25A39Q9BZJ4 359 aaPredicted RBP20.71■□□□□ 0.91
MSX1-201ENST00000382723 C9JQL5 133 aa20.7■□□□□ 0.9
MSX1-201ENST00000382723 IFNA1P01562 189 aa20.7■□□□□ 0.9
MSX1-201ENST00000382723 CD5P06127 495 aa20.7■□□□□ 0.9
MSX1-201ENST00000382723 OR10J4P0C629 311 aa20.7■□□□□ 0.9
MSX1-201ENST00000382723 RELQ04864 619 aaPredicted RBP20.7■□□□□ 0.9
MSX1-201ENST00000382723 PEA15Q15121 130 aa20.7■□□□□ 0.9
MSX1-201ENST00000382723 ZNF503Q96F45 646 aa20.7■□□□□ 0.9
MSX1-201ENST00000382723 NSD1Q96L73 2696 aaPredicted RBP20.7■□□□□ 0.9
MSX1-201ENST00000382723 TCF21O43680 179 aa20.69■□□□□ 0.9
MSX1-201ENST00000382723 BCL2P10415 239 aa20.69■□□□□ 0.9
MSX1-201ENST00000382723 PSMB3P49720 205 aa20.69■□□□□ 0.9
MSX1-201ENST00000382723 SRSF2Q01130 221 aaKnown RBP20.69■□□□□ 0.9
MSX1-201ENST00000382723 RXFP4Q8TDU9 374 aa20.69■□□□□ 0.9
MSX1-201ENST00000382723 LOC102723971A0A1B0GUV8 181 aa20.68■□□□□ 0.9
MSX1-201ENST00000382723 UBE2G2P60604 165 aa20.68■□□□□ 0.9
MSX1-201ENST00000382723 ICAM4Q14773 271 aa20.68■□□□□ 0.9
MSX1-201ENST00000382723 PQLC2Q6ZP29 291 aa20.68■□□□□ 0.9
MSX1-201ENST00000382723 RNF152Q8N8N0 203 aa20.68■□□□□ 0.9
MSX1-201ENST00000382723 ZFAND3Q9H8U3 227 aa20.68■□□□□ 0.9
MSX1-201ENST00000382723 PYYP10082 97 aa20.67■□□□□ 0.9
MSX1-201ENST00000382723 ZNF506Q5JVG8 444 aa20.67■□□□□ 0.9
MSX1-201ENST00000382723 PEF1Q9UBV8 284 aaKnown RBP20.67■□□□□ 0.9
MSX1-201ENST00000382723 FN1P02751 2386 aaKnown RBP20.67■□□□□ 0.9
MSX1-201ENST00000382723 NF1P21359 2839 aa20.67■□□□□ 0.9
MSX1-201ENST00000382723 BMPR1BO00238 502 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 PAGE4O60829 102 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 MYOZ3Q8TDC0 251 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 SHANK2-AS3Q9BTD1 123 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 C16orf95Q9H693 158 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 MANBALQ9NQG1 85 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 H3BRN7 92 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 SNRPCP09234 159 aaKnown RBP20.66■□□□□ 0.9
MSX1-201ENST00000382723 PMS2P11Q13670 270 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 LINC01006Q8NI28 216 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 LINC00052Q96N35 136 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 PAXXQ9BUH6 204 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 OR51M1Q9H341 326 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 RABAC1Q9UI14 185 aa20.66■□□□□ 0.9
MSX1-201ENST00000382723 PPT1P50897 306 aa20.65■□□□□ 0.9
MSX1-201ENST00000382723 UBE2L3P68036 154 aaKnown RBP20.65■□□□□ 0.9
MSX1-201ENST00000382723 C20orf24Q9BUV8 137 aa20.65■□□□□ 0.9
MSX1-201ENST00000382723 VAX2Q9UIW0 290 aa20.65■□□□□ 0.9
MSX1-201ENST00000382723 UBE2E2Q96LR5 201 aa20.65■□□□□ 0.9
MSX1-201ENST00000382723 F8P00451 2351 aa20.64■□□□□ 0.89
MSX1-201ENST00000382723 TCTEX1D4Q5JR98 221 aa20.64■□□□□ 0.89
MSX1-201ENST00000382723 TMEM167BQ9NRX6 74 aa20.64■□□□□ 0.89
MSX1-201ENST00000382723 TMEM218A2RU14 115 aa20.63■□□□□ 0.89
MSX1-201ENST00000382723 ZNF207O43670 478 aaKnown RBP20.63■□□□□ 0.89
MSX1-201ENST00000382723 GGCTO75223 188 aaKnown RBP20.63■□□□□ 0.89
MSX1-201ENST00000382723 SFTA3P0C7M3 94 aa20.63■□□□□ 0.89
MSX1-201ENST00000382723 FAM209BQ5JX69 171 aa20.63■□□□□ 0.89
MSX1-201ENST00000382723 CST9LP1Q5W188 147 aa20.63■□□□□ 0.89
MSX1-201ENST00000382723 HIST2H2BDQ6DRA6 164 aa20.63■□□□□ 0.89
MSX1-201ENST00000382723 S100A7AQ86SG5 101 aa20.63■□□□□ 0.89
MSX1-201ENST00000382723 ZNF98A6NK75 572 aa20.63■□□□□ 0.89
MSX1-201ENST00000382723 HSPB1P04792 205 aaKnown RBP20.63■□□□□ 0.89
MSX1-201ENST00000382723 KHDC1LQ5JSQ8 128 aa20.63■□□□□ 0.89
MSX1-201ENST00000382723 HAX1O00165 279 aa20.62■□□□□ 0.89
MSX1-201ENST00000382723 LGALS1P09382 135 aaKnown RBP20.62■□□□□ 0.89
MSX1-201ENST00000382723 CCDC28AQ8IWP9 274 aa20.62■□□□□ 0.89
MSX1-201ENST00000382723 STXBP6Q8NFX7 210 aa20.62■□□□□ 0.89
MSX1-201ENST00000382723 YTHDF2Q9Y5A9 579 aaKnown RBP20.62■□□□□ 0.89
MSX1-201ENST00000382723 CLPSL1A2RUU4 121 aa20.61■□□□□ 0.89
MSX1-201ENST00000382723 CEBPGP53567 150 aa20.61■□□□□ 0.89
MSX1-201ENST00000382723 UNQ9165/PRO28630Q6UXU0 137 aa20.61■□□□□ 0.89
MSX1-201ENST00000382723 C18orf65Q6ZTR6 163 aa20.61■□□□□ 0.89
MSX1-201ENST00000382723 NDUFA4O00483 81 aa20.61■□□□□ 0.89
MSX1-201ENST00000382723 NDUFA7O95182 113 aa20.61■□□□□ 0.89
MSX1-201ENST00000382723 GP9P14770 177 aa20.61■□□□□ 0.89
MSX1-201ENST00000382723 MEF2BQ02080 365 aaPredicted RBP20.61■□□□□ 0.89
MSX1-201ENST00000382723 FXYD5Q96DB9 178 aa20.61■□□□□ 0.89
MSX1-201ENST00000382723 KRBOX1C9JBD0 128 aa20.6■□□□□ 0.89
MSX1-201ENST00000382723 ATP5G3P48201 142 aa20.6■□□□□ 0.89
MSX1-201ENST00000382723 C11orf44Q8N8P7 122 aa20.6■□□□□ 0.89
MSX1-201ENST00000382723 SLC35B3Q9H1N7 401 aa20.6■□□□□ 0.89
MSX1-201ENST00000382723 SMDT1Q9H4I9 107 aa20.6■□□□□ 0.89
MSX1-201ENST00000382723 ZNF320A2RRD8 509 aa20.59■□□□□ 0.89
MSX1-201ENST00000382723 C11orf94C9JXX5 98 aa20.59■□□□□ 0.89
MSX1-201ENST00000382723 SRP19P09132 144 aaKnown RBP20.59■□□□□ 0.89
MSX1-201ENST00000382723 ZP3P21754 424 aa20.59■□□□□ 0.89
MSX1-201ENST00000382723 TAGLN2P37802 199 aaKnown RBP20.59■□□□□ 0.89
MSX1-201ENST00000382723 CD81P60033 236 aa20.59■□□□□ 0.89
MSX1-201ENST00000382723 OR4F5Q8NH21 305 aa20.59■□□□□ 0.89
MSX1-201ENST00000382723 WIPF2Q8TF74 440 aaPredicted RBP20.59■□□□□ 0.89
MSX1-201ENST00000382723 OR4F4Q96R69 305 aa20.59■□□□□ 0.89
MSX1-201ENST00000382723 METTL26Q96S19 204 aa20.59■□□□□ 0.89
MSX1-201ENST00000382723 FAM74A7A6NL05 159 aa20.59■□□□□ 0.89
MSX1-201ENST00000382723 SUN5Q8TC36 379 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms