RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 FCN1O00602 326 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 SERF1AO75920 110 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 MT-CO2P00403 227 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 BRS3P32247 399 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 RANP62826 216 aaKnown RBP9.88□□□□□ -0.83
CIITA-202ENST00000381835 C16orf54Q6UWD8 224 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 BAGE3Q86Y29 109 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 BAGE2Q86Y30 109 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 TEX45Q8NA69 505 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 OR1L6Q8NGR2 347 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 OR4A5Q8NH83 315 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 RNF5Q99942 180 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 HSPB9Q9BQS6 159 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 SEPSECSQ9HD40 501 aaKnown RBP9.88□□□□□ -0.83
CIITA-202ENST00000381835 SIGLEC9Q9Y336 463 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 SONP18583 2426 aaKnown RBP9.88□□□□□ -0.83
CIITA-202ENST00000381835 TEX50A0A1B0GTY4 177 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 M0QZK8 103 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 ZNF25P17030 456 aaPredicted RBP9.88□□□□□ -0.83
CIITA-202ENST00000381835 RHOBP62745 196 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 SPATA31B1PQ5VZV4 182 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 PPP1R27Q86WC6 154 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 UHRF2Q96PU4 802 aa9.88□□□□□ -0.83
CIITA-202ENST00000381835 NCBP2LA6PVI3 153 aaKnown RBP9.87□□□□□ -0.83
CIITA-202ENST00000381835 NBR2O15453 112 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 FAM106CPP0CH98 169 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 IER3P46695 156 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 RPEL1Q2QD12 228 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 TDRG1Q3Y452 100 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 C10orf55Q5SWW7 151 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 TEPPQ6URK8 271 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 OR5AU1Q8NGC0 362 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 C22orf15Q8WYQ4 148 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 SAMD10Q9BYL1 202 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 ZNF257Q9Y2Q1 563 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 E7EUB6 86 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 ACTL6BO94805 426 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 CRYGBP07316 175 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 LINC00614P0C842 121 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 ESDP10768 282 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 LINC00310P59036 64 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 TNXAQ16473 311 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 TMEM183BQ1AE95 376 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 MRGPRG-AS1Q2M3A8 158 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 STPG3Q8N7X2 389 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 OR5B3Q8NH48 314 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 ENY2Q9NPA8 101 aa9.87□□□□□ -0.83
CIITA-202ENST00000381835 LSM4Q9Y4Z0 139 aaKnown RBP9.87□□□□□ -0.83
CIITA-202ENST00000381835 SNURFLB1AK76 121 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 C9JCJ5 164 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 RPLP1P05386 114 aaKnown RBP9.86□□□□□ -0.83
CIITA-202ENST00000381835 RAB31Q13636 194 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 EBI3Q14213 229 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 ARSJQ5FYB0 599 aaPredicted RBP9.86□□□□□ -0.83
CIITA-202ENST00000381835 TEX43Q6ZNM6 134 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 MMD2Q8IY49 270 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 OR1L8Q8NGR8 309 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 VN1R17PQ8TDU5 208 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 C20orf144Q9BQM9 153 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 MIEN1Q9BRT3 115 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 PLEKHA3Q9HB20 300 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 PAM16Q9Y3D7 125 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 MXRA5Q9NR99 2828 aa9.86□□□□□ -0.83
CIITA-202ENST00000381835 PRCDQ00LT1 54 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 NPBQ8NG41 125 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 OR10W1Q8NGF6 305 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 C11orf52Q96A22 123 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 VAMP8Q9BV40 100 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 MEGF9Q9H1U4 602 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 LY96Q9Y6Y9 160 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 F2Z2F3 143 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 NDUFA3O95167 84 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 NPY1RP25929 384 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 OR5I1Q13606 314 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 OR8I2Q8N0Y5 310 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 BCL6BQ8N143 479 aaPredicted RBP9.85□□□□□ -0.83
CIITA-202ENST00000381835 Q8N6K4 173 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 SLC24A4Q8NFF2 622 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 NDUFA4L2Q9NRX3 87 aa9.85□□□□□ -0.83
CIITA-202ENST00000381835 FRMD6-AS1P0C7T7 363 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 Q0VG73 95 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 C5orf64Q2M2E5 130 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 MRPL52Q86TS9 123 aaKnown RBP9.84□□□□□ -0.83
CIITA-202ENST00000381835 V9GYV3 84 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 TRBV9A0A0B4J1U6 114 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 HELTA6NFD8 242 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 CGB1A6NKQ9 187 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 CIDEAO60543 219 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 CNIH1O95406 144 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 CA2P00918 260 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 APELAP0DMC3 54 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 GNG4P50150 75 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 RPL19P84098 196 aaKnown RBP9.84□□□□□ -0.83
CIITA-202ENST00000381835 GAGE1Q13065 139 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 TMEM219Q86XT9 240 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 SIGLECL1Q8N7X8 197 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 FAM103A1Q9BTL3 118 aaKnown RBP9.84□□□□□ -0.83
CIITA-202ENST00000381835 GNB1LQ9BYB4 327 aa9.84□□□□□ -0.83
CIITA-202ENST00000381835 SPINK4O60575 86 aa9.83□□□□□ -0.84
CIITA-202ENST00000381835 AREGP15514 252 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms