RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MPC2O95563 127 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 OR2H2O95918 312 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV3-30P01768 117 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV3-33P01772 117 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV3-30-3P0DP02 117 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV3-30-5P0DP03 117 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IFITM1P13164 125 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 SYNJ2BPP57105 145 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 RPL23P62829 140 aaKnown RBP3.87□□□□□ -1.79
SCN1A-202ENST00000375405 PRR20EP86478 221 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 PRR20CP86479 221 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 PRR20DP86480 221 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 PRR20BP86481 221 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 PRR20AP86496 221 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 FAM90A26D6RGX4 464 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 FGF16O43320 207 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 LAGE3Q14657 143 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 SURF2Q15527 256 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-202ENST00000375405 FAM90A2PQ658T7 463 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 BRD3OSQ6XYD6 125 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 PPDPFLQ8WWR9 84 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 LYZL4Q96KX0 146 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 ASCL2Q99929 193 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 DCCP43146 1447 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 TNRC6AQ8NDV7 1962 aaKnown RBP3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV1OR21-1A0A087WYE8 117 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 SOCS1O15524 211 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 CCL3P10147 92 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 TCF15Q12870 199 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IL17RELQ6ZVW7 336 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 GPHA2Q96T91 129 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 Q9H3A6 140 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 A0A1B0GUL6 1792 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 UBE2D2P62837 147 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 C2orf68Q2NKX9 166 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 MARVELD1Q9BSK0 173 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV3-38A0A0C4DH36 116 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 M0QZQ0 153 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 CXCL3P19876 107 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 FOXL1Q12952 345 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 CDK5R1Q15078 307 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 STPG4Q8N801 248 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IGKV2-24A0A0C4DH68 120 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 A0A1B0GTI1 187 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 ZNF79Q15937 498 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 ATP1A1-AS1Q5TC04 95 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 PLEKHB2Q96CS7 222 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 MCRIP2Q9BUT9 160 aaKnown RBP3.87□□□□□ -1.79
SCN1A-202ENST00000375405 NPDC1Q9NQX5 325 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV5-10-1A0A0J9YXX1 117 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 FGFBP3Q8TAT2 258 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 FMC1Q96HJ9 113 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 ROS1P08922 2347 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 IGLV10-54A0A075B6I4 117 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV1OR15-1A0A075B7D0 117 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 TEX49A0A1B0GTD5 131 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 AGAP20933 346 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 C15orf32Q32M92 178 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 VSIG2Q96IQ7 327 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 NAA38Q9BRA0 125 aaKnown RBP3.86□□□□□ -1.79
SCN1A-202ENST00000375405 KLK9Q9UKQ9 250 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 A0A1B0GTL3 188 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 NDUFS7O75251 213 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 C1QL1O75973 258 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 LYPD6BQ8NI32 183 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 NABP1Q96AH0 204 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 RASL10BQ96S79 203 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 OSTCQ9NRP0 149 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 ZG16O60844 167 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 SPINK8P0C7L1 97 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 HOXB1P14653 301 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-202ENST00000375405 DDTP30046 118 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 SSBP1Q04837 148 aaKnown RBP3.86□□□□□ -1.79
SCN1A-202ENST00000375405 C7orf33Q8WU49 177 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 RGPD1P0DJD0 1748 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 ZNF646O15015 1829 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-202ENST00000375405 HIGD1CA8MV81 97 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 ZC2HC1AQ96GY0 325 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 LINC00479Q96M42 142 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 CSTL1Q9H114 145 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 MRPS18AQ9NVS2 196 aaKnown RBP3.86□□□□□ -1.79
SCN1A-202ENST00000375405 SCN11AQ9UI33 1791 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 IGFBP6P24592 240 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-202ENST00000375405 NREPQ16612 68 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 CAMK2N2Q96S95 79 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 DDA1Q9BW61 102 aa3.86□□□□□ -1.79
SCN1A-202ENST00000375405 PIEZO1Q92508 2521 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 H3BUX3 64 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 IGHV1-8P0DP01 117 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 TIMP3P35625 211 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 AMN1Q8IY45 258 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 FAM208BQ5VWN6 2430 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 A0A0U1RQV1 116 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 DEFB131AP59861 70 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 FAM27E3Q08E93 113 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 DUX4L9Q6RFH8 374 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-202ENST00000375405 FAM90A1Q86YD7 464 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 GDF15Q99988 308 aa3.85□□□□□ -1.79
SCN1A-202ENST00000375405 ZNF275Q9NSD4 429 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-202ENST00000375405 V9GYH0 126 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms