RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 IGHV2-26A0A0B4J1V2 119 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 NRN1LQ496H8 165 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 AGMATQ9BSE5 352 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 ANAPC10Q9UM13 185 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 SLC25A48Q6ZT89 311 aaKnown RBP13.18□□□□□ -0.3
COL18A1-203ENST00000359759 LINC01551Q86U37 167 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 CYTL1Q9NRR1 136 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 GAGE12BA1L429 117 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 SYS1-DBNDD2H3BUS1 97 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 IGHV1-46P01743 117 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 F5P12259 2224 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 RPRMLQ8N4K4 120 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 CHAC1Q9BUX1 264 aa13.18□□□□□ -0.3
COL18A1-203ENST00000359759 MPZP25189 248 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 UBE2V1Q13404 147 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 C9orf153Q5TBE3 101 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 TMEM200BQ69YZ2 307 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 ZNF114Q8NC26 417 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 RSPO3Q9BXY4 272 aaPredicted RBP13.17□□□□□ -0.3
COL18A1-203ENST00000359759 DEFB121Q5J5C9 76 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 RP1P56715 2156 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 RPL36AP83881 106 aaKnown RBP13.17□□□□□ -0.3
COL18A1-203ENST00000359759 RPL36ALQ969Q0 106 aaKnown RBP13.17□□□□□ -0.3
COL18A1-203ENST00000359759 TMEM242Q9NWH2 141 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.17□□□□□ -0.3
COL18A1-203ENST00000359759 STPG4Q8N801 248 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 TIMM21Q9BVV7 248 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 AMN1Q8IY45 258 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 TNFRSF14Q92956 283 aa13.17□□□□□ -0.3
COL18A1-203ENST00000359759 TRBV24-1A0A075B6N3 115 aa13.16□□□□□ -0.3
COL18A1-203ENST00000359759 IGKV1-12A0A0C4DH73 117 aa13.16□□□□□ -0.3
COL18A1-203ENST00000359759 IGKV1D-12P01611 117 aa13.16□□□□□ -0.3
COL18A1-203ENST00000359759 CSRP3P50461 194 aa13.16□□□□□ -0.3
COL18A1-203ENST00000359759 TCF15Q12870 199 aa13.16□□□□□ -0.3
COL18A1-203ENST00000359759 RNASE6Q93091 150 aaKnown RBP13.16□□□□□ -0.3
COL18A1-203ENST00000359759 LINC00205P59089 165 aa13.16□□□□□ -0.3
COL18A1-203ENST00000359759 BRWD3Q6RI45 1802 aa13.16□□□□□ -0.3
COL18A1-203ENST00000359759 METRNQ9UJH8 293 aa13.16□□□□□ -0.3
COL18A1-203ENST00000359759 KLF12Q9Y4X4 402 aa13.15□□□□□ -0.3
COL18A1-203ENST00000359759 ARHGEF17Q96PE2 2063 aaPredicted RBP13.15□□□□□ -0.3
COL18A1-203ENST00000359759 VCYO14598 125 aa13.15□□□□□ -0.3
COL18A1-203ENST00000359759 ZNF664Q8N3J9 261 aa13.15□□□□□ -0.3
COL18A1-203ENST00000359759 PRIMA1Q86XR5 153 aa13.15□□□□□ -0.3
COL18A1-203ENST00000359759 MESP1Q9BRJ9 268 aa13.15□□□□□ -0.3
COL18A1-203ENST00000359759 MYOFQ9NZM1 2061 aa13.15□□□□□ -0.3
COL18A1-203ENST00000359759 FAM90A9PA6NNJ1 464 aa13.15□□□□□ -0.31
COL18A1-203ENST00000359759 FOXF2Q12947 444 aa13.15□□□□□ -0.31
COL18A1-203ENST00000359759 RALGAPA1Q6GYQ0 2036 aa13.14□□□□□ -0.31
COL18A1-203ENST00000359759 PYY3Q5JQD4 70 aa13.14□□□□□ -0.31
COL18A1-203ENST00000359759 BRD3OSQ6XYD6 125 aa13.14□□□□□ -0.31
COL18A1-203ENST00000359759 IGHV1-3A0A0C4DH29 117 aa13.14□□□□□ -0.31
COL18A1-203ENST00000359759 ZC2HC1BQ5TFG8 222 aa13.14□□□□□ -0.31
COL18A1-203ENST00000359759 NEUROG3Q9Y4Z2 214 aa13.14□□□□□ -0.31
COL18A1-203ENST00000359759 CFHR3Q02985 330 aa13.14□□□□□ -0.31
COL18A1-203ENST00000359759 IGKV1-27A0A075B6S5 117 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 MYMXA0A1B0GTQ4 84 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 LY6DQ14210 128 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 SIPA1L3O60292 1781 aaPredicted RBP13.13□□□□□ -0.31
COL18A1-203ENST00000359759 PLSCR4Q9NRQ2 329 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 THSD7AQ9UPZ6 1657 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 PRSS57Q6UWY2 283 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 COL18A1P39060 1754 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 J3QRE1 110 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 FOXG1P55316 489 aaPredicted RBP13.13□□□□□ -0.31
COL18A1-203ENST00000359759 DNAJC30Q96LL9 226 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 CHD5Q8TDI0 1954 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 NTF4P34130 210 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 RBMY1FQ15415 496 aaKnown RBP13.13□□□□□ -0.31
COL18A1-203ENST00000359759 LINC00477Q96M19 166 aa13.13□□□□□ -0.31
COL18A1-203ENST00000359759 EREGO14944 169 aa13.12□□□□□ -0.31
COL18A1-203ENST00000359759 RPP25LQ8N5L8 163 aaKnown RBP13.12□□□□□ -0.31
COL18A1-203ENST00000359759 SUPT4H1P63272 117 aaKnown RBP13.12□□□□□ -0.31
COL18A1-203ENST00000359759 ZNF329Q86UD4 541 aa13.12□□□□□ -0.31
COL18A1-203ENST00000359759 CD177Q8N6Q3 437 aa13.12□□□□□ -0.31
COL18A1-203ENST00000359759 H3BMM0 161 aa13.12□□□□□ -0.31
COL18A1-203ENST00000359759 UBE2WQ96B02 151 aa13.12□□□□□ -0.31
COL18A1-203ENST00000359759 PATJQ8NI35 1801 aa13.12□□□□□ -0.31
COL18A1-203ENST00000359759 LYPD3O95274 346 aa13.12□□□□□ -0.31
COL18A1-203ENST00000359759 RASL11AQ6T310 242 aa13.11□□□□□ -0.31
COL18A1-203ENST00000359759 A0A1B0GUS0 222 aa13.11□□□□□ -0.31
COL18A1-203ENST00000359759 IGHV1-8P0DP01 117 aa13.11□□□□□ -0.31
COL18A1-203ENST00000359759 REG4Q9BYZ8 158 aa13.11□□□□□ -0.31
COL18A1-203ENST00000359759 OVOL2Q9BRP0 275 aa13.11□□□□□ -0.31
COL18A1-203ENST00000359759 MRPS18CQ9Y3D5 142 aaKnown RBP13.11□□□□□ -0.31
COL18A1-203ENST00000359759 A0A1B0GWJ7 208 aa13.11□□□□□ -0.31
COL18A1-203ENST00000359759 SS18Q15532 418 aa13.11□□□□□ -0.31
COL18A1-203ENST00000359759 MLANAQ16655 118 aa13.11□□□□□ -0.31
COL18A1-203ENST00000359759 LINC00479Q96M42 142 aa13.11□□□□□ -0.31
COL18A1-203ENST00000359759 FAM231BA6NCW3 169 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 IGKV1-5P01602 117 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 C8orf49Q96NF6 230 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 IGHV3-16A0A0C4DH30 117 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 DEFB130BP0DP73 79 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 DEFB130AP0DP74 79 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 ZNF672Q499Z4 452 aaPredicted RBP13.1□□□□□ -0.31
COL18A1-203ENST00000359759 NABP1Q96AH0 204 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 PRB1P04280 392 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 TRGV9Q99603 122 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 SNHG12Q9BXW3 62 aa13.1□□□□□ -0.31
COL18A1-203ENST00000359759 ZNF581Q9P0T4 197 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms