RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 NDUFS7O75251 213 aa12.08□□□□□ -0.48
COL17A1-201ENST00000353479 C18orf15Q96N68 181 aa12.08□□□□□ -0.48
COL17A1-201ENST00000353479 A0A1W2PPI3 338 aa12.07□□□□□ -0.48
COL17A1-201ENST00000353479 SPATA45Q537H7 98 aa12.07□□□□□ -0.48
COL17A1-201ENST00000353479 OCC1Q8TAD7 63 aa12.07□□□□□ -0.48
COL17A1-201ENST00000353479 CR1LQ2VPA4 569 aa12.07□□□□□ -0.48
COL17A1-201ENST00000353479 ZNF98A6NK75 572 aa12.07□□□□□ -0.48
COL17A1-201ENST00000353479 FAM223BA6NKX1 122 aa12.07□□□□□ -0.48
COL17A1-201ENST00000353479 APOHP02749 345 aaPredicted RBP12.07□□□□□ -0.48
COL17A1-201ENST00000353479 FAM223AQ8IWN6 122 aa12.07□□□□□ -0.48
COL17A1-201ENST00000353479 OR5AN1Q8NGI8 311 aa12.07□□□□□ -0.48
COL17A1-201ENST00000353479 SOX21Q9Y651 276 aaPredicted RBP12.07□□□□□ -0.48
COL17A1-201ENST00000353479 SRCAPQ6ZRS2 3230 aa12.07□□□□□ -0.48
COL17A1-201ENST00000353479 ATP6V0E1O15342 81 aa12.06□□□□□ -0.48
COL17A1-201ENST00000353479 PKIAP61925 76 aa12.06□□□□□ -0.48
COL17A1-201ENST00000353479 Q71RC1 249 aaPredicted RBP12.06□□□□□ -0.48
COL17A1-201ENST00000353479 RPP25LQ8N5L8 163 aaKnown RBP12.06□□□□□ -0.48
COL17A1-201ENST00000353479 ZNF688P0C7X2 276 aa12.06□□□□□ -0.48
COL17A1-201ENST00000353479 COL4A4P53420 1690 aaPredicted RBP12.06□□□□□ -0.48
COL17A1-201ENST00000353479 A6NDN8 102 aa12.06□□□□□ -0.48
COL17A1-201ENST00000353479 PPP1R17O96001 155 aa12.06□□□□□ -0.48
COL17A1-201ENST00000353479 PMCHL1Q16048 86 aa12.06□□□□□ -0.48
COL17A1-201ENST00000353479 IGLV3-1P01715 115 aa12.06□□□□□ -0.48
COL17A1-201ENST00000353479 ZNF562Q6V9R5 426 aa12.06□□□□□ -0.48
COL17A1-201ENST00000353479 OBSL1O75147 1896 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 A0A087WWC5 75 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 NPIPB5A8MRT5 1133 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 LGALS3P17931 250 aaKnown RBP12.05□□□□□ -0.48
COL17A1-201ENST00000353479 GCSHP23434 173 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 ZNF833PQ6ZTB9 187 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 ZNF256Q9Y2P7 627 aaPredicted RBP12.05□□□□□ -0.48
COL17A1-201ENST00000353479 A0A1B0GW15 77 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 MMP23AO75900 390 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 PAPPA-AS1Q5QFB9 102 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 ATRAIDQ6UW56 229 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 GTF2H5Q6ZYL4 71 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 ATOH7Q8N100 152 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 TMEM101Q96IK0 257 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 NCOR1P1Q9H4R4 102 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 VPS25Q9BRG1 176 aa12.05□□□□□ -0.48
COL17A1-201ENST00000353479 SSBP4Q9BWG4 385 aaPredicted RBP12.05□□□□□ -0.48
COL17A1-201ENST00000353479 PEF1Q9UBV8 284 aaKnown RBP12.04□□□□□ -0.48
COL17A1-201ENST00000353479 FAM208BQ5VWN6 2430 aa12.04□□□□□ -0.48
COL17A1-201ENST00000353479 IGFL4Q6B9Z1 124 aa12.04□□□□□ -0.48
COL17A1-201ENST00000353479 ORMDL3Q8N138 153 aa12.04□□□□□ -0.48
COL17A1-201ENST00000353479 ZNF25P17030 456 aaPredicted RBP12.04□□□□□ -0.48
COL17A1-201ENST00000353479 SUMO2P61956 95 aaKnown RBP12.04□□□□□ -0.48
COL17A1-201ENST00000353479 TCF23Q7RTU1 214 aa12.04□□□□□ -0.48
COL17A1-201ENST00000353479 AGMATQ9BSE5 352 aa12.04□□□□□ -0.48
COL17A1-201ENST00000353479 CDX1P47902 265 aaPredicted RBP12.04□□□□□ -0.48
COL17A1-201ENST00000353479 C15orf65H3BRN8 121 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 OVOL3O00110 214 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 CA1P00915 261 aaPredicted RBP12.03□□□□□ -0.48
COL17A1-201ENST00000353479 DMRTC2Q8IXT2 367 aaPredicted RBP12.03□□□□□ -0.48
COL17A1-201ENST00000353479 OSTCQ9NRP0 149 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 TOMM40O96008 361 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 PRSS2P07478 247 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 C21orf62-AS1Q17RA5 79 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 LIME1Q9H400 295 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 G3V318 75 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 SYNJ2BPP57105 145 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 SRSF8Q9BRL6 282 aaKnown RBP12.03□□□□□ -0.48
COL17A1-201ENST00000353479 RHPN1-AS1Q9BWJ2 59 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 REG4Q9BYZ8 158 aa12.03□□□□□ -0.48
COL17A1-201ENST00000353479 DOPEY2Q9Y3R5 2298 aa12.02□□□□□ -0.48
COL17A1-201ENST00000353479 RAB37Q96AX2 223 aa12.02□□□□□ -0.48
COL17A1-201ENST00000353479 TMEM160Q9NX00 188 aa12.02□□□□□ -0.48
COL17A1-201ENST00000353479 ANAPC10Q9UM13 185 aa12.02□□□□□ -0.48
COL17A1-201ENST00000353479 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.02□□□□□ -0.48
COL17A1-201ENST00000353479 TRAV9-1A0A075B6T8 112 aa12.02□□□□□ -0.48
COL17A1-201ENST00000353479 OR10J3Q5JRS4 329 aa12.02□□□□□ -0.48
COL17A1-201ENST00000353479 H7C2G1 150 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 FCN3O75636 299 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 TMEM50AO95807 157 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 ZNF134P52741 427 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 IL17RELQ6ZVW7 336 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 TMEM183AQ8IXX5 376 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 SCGB3A1Q96QR1 104 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 DIAPH2-AS1Q14236 149 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 MEIG1Q5JSS6 88 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 ACTL10Q5JWF8 245 aa12.02□□□□□ -0.49
COL17A1-201ENST00000353479 TRGV11A0A075B6L2 103 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 ADORA2A-AS1P86434 159 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 SPRNQ5BIV9 151 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 TMEM170BQ5T4T1 132 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 ZNF414Q96IQ9 312 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 TMEM14BQ9NUH8 114 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 C1QL4Q86Z23 238 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 TMEM70Q9BUB7 260 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.01□□□□□ -0.49
COL17A1-201ENST00000353479 C9orf139Q6ZV77 190 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 FAM110DQ8TAY7 271 aaPredicted RBP12.01□□□□□ -0.49
COL17A1-201ENST00000353479 DPH3Q96FX2 82 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 MED13LQ71F56 2210 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 H3BVH4 76 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 TCRAP04437 139 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 C3orf56Q8N813 242 aa12.01□□□□□ -0.49
COL17A1-201ENST00000353479 CD5P06127 495 aa12□□□□□ -0.49
COL17A1-201ENST00000353479 RPL35AP18077 110 aaKnown RBP12□□□□□ -0.49
COL17A1-201ENST00000353479 FXYD7P58549 80 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms