RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 INSIG2Q9Y5U4 225 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 LAMA1P25391 3075 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 F5P12259 2224 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 LINC00473A8K010 186 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 H3BMG7 143 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 FCGR3BO75015 233 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 CLEC3BP05452 202 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 NMUP48645 174 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 ETDBQ3ZM63 59 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 OXLD1Q5BKU9 147 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 Q6ZS52 159 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 ABHD12Q8N2K0 398 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 FAM169BQ8N8A8 192 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 OR8A1Q8NGG7 326 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 FGFBP3Q8TAT2 258 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 ARPC1AQ92747 370 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 TMEM140Q9NV12 185 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 SS18L2Q9UHA2 77 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 KLF12Q9Y4X4 402 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 LINC00312Q9Y6C7 94 aa6.6□□□□□ -1.35
ATG4A-201ENST00000343524 CHCHD2Q9Y6H1 151 aaPredicted RBP6.6□□□□□ -1.35
ATG4A-201ENST00000343524 ARHGAP21Q5T5U3 1957 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 GTF3C1Q12789 2109 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 CACNA1EQ15878 2313 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 TCRBV4S1A1TA0A5B7 111 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 C5orf49A4QMS7 147 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 PATE3B3GLJ2 98 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 TMEM262E9PQX1 116 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 NKX2-8O15522 239 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 SPINT2O43291 252 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 DUX1O43812 170 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 CER1O95813 267 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 HBDP02042 147 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 HSPE1P61604 102 aaKnown RBP6.59□□□□□ -1.35
ATG4A-201ENST00000343524 PLP2Q04941 152 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 TNP2Q05952 138 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 FOXI1Q12951 378 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 WFDC2Q14508 124 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 TMEM177Q53S58 311 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 Q6ZUT4 128 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 CEND1Q8N111 149 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 SYT8Q8NBV8 401 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 PHLDA1Q8WV24 401 aaPredicted RBP6.59□□□□□ -1.35
ATG4A-201ENST00000343524 PGLYRP4Q96LB8 373 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 S1PR3Q99500 378 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 PAXXQ9BUH6 204 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 SRXN1Q9BYN0 137 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 CEP192Q8TEP8 1941 aa6.59□□□□□ -1.35
ATG4A-201ENST00000343524 A0A0J9YW62 118 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 A0A1B0GWB2 263 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 C19orf71A6NCJ1 209 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 SRRM4A7MD48 611 aaKnown RBP6.58□□□□□ -1.36
ATG4A-201ENST00000343524 IGLL5B9A064 214 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 NPIPB6E9PJ23 425 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 COX7A2P2O60397 106 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 CACNG7P62955 275 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 TM4SF20Q53R12 229 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 ZFAND6Q6FIF0 208 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 C17orf82Q86X59 251 aaPredicted RBP6.58□□□□□ -1.36
ATG4A-201ENST00000343524 PDPNQ86YL7 162 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 UBALD1Q8TB05 177 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 RLN3Q8WXF3 142 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 RNF183Q96D59 192 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 SLC25A2Q9BXI2 301 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 NHP2Q9NX24 153 aaKnown RBP6.58□□□□□ -1.36
ATG4A-201ENST00000343524 PRNDQ9UKY0 176 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 TIMM8BQ9Y5J9 83 aaPredicted RBP6.58□□□□□ -1.36
ATG4A-201ENST00000343524 FBN2P35556 2912 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 A0A1B0GUT8 65 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 NCR2O95944 276 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 CSN3P07498 182 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 CCL2P13500 99 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 FXYD2P54710 66 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 MRPS21P82921 87 aaKnown RBP6.58□□□□□ -1.36
ATG4A-201ENST00000343524 CACNG8Q8WXS5 425 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 MCRIP2Q9BUT9 160 aaKnown RBP6.58□□□□□ -1.36
ATG4A-201ENST00000343524 MLST8Q9BVC4 326 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 TMEM14BQ9NUH8 114 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 EPDR1Q9UM22 224 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 SELENOKQ9Y6D0 94 aa6.58□□□□□ -1.36
ATG4A-201ENST00000343524 C2CD3Q4AC94 2353 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 PCDH15Q96QU1 1955 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 C10orf142B7Z368 130 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 LTAP01374 205 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 SLC25A5P05141 298 aaKnown RBP6.57□□□□□ -1.36
ATG4A-201ENST00000343524 IGHV4-34P06331 123 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 ZNF137PP52743 207 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 FOXF2Q12947 444 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 KRTAP21-3Q3LHN1 58 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 C2orf83Q53S99 150 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 PEAR1Q5VY43 1037 aaPredicted RBP6.57□□□□□ -1.36
ATG4A-201ENST00000343524 SHISA2Q6UWI4 295 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 TEX29Q8N6K0 151 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 RND1Q92730 232 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 IFI27L1Q96BM0 104 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 FAM167A-AS1Q96KT0 104 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 RAB9BQ9NP90 201 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 PRO0461Q9UI25 63 aa6.57□□□□□ -1.36
ATG4A-201ENST00000343524 LINC01619G3V211 115 aa6.56□□□□□ -1.36
ATG4A-201ENST00000343524 ATP5G2Q06055 141 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms