RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 COTL1Q14019 142 aa17.95■□□□□ 0.46
TRIM28-202ENST00000341753 ZNF788Q6ZQV5 615 aa17.95■□□□□ 0.46
TRIM28-202ENST00000341753 LOC102724200A0A096LPH7 203 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-202ENST00000341753 A8MWL6 223 aa17.95■□□□□ 0.46
TRIM28-202ENST00000341753 CRXO43186 299 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-202ENST00000341753 KLK10O43240 276 aa17.95■□□□□ 0.46
TRIM28-202ENST00000341753 ZCCHC24Q8N2G6 241 aaKnown RBP17.95■□□□□ 0.46
TRIM28-202ENST00000341753 RITA1Q96K30 269 aa17.95■□□□□ 0.46
TRIM28-202ENST00000341753 MLST8Q9BVC4 326 aa17.95■□□□□ 0.46
TRIM28-202ENST00000341753 SSUH2Q9Y2M2 353 aa17.95■□□□□ 0.46
TRIM28-202ENST00000341753 ZGRF1Q86YA3 2104 aa17.94■□□□□ 0.46
TRIM28-202ENST00000341753 RELNP78509 3460 aa17.94■□□□□ 0.46
TRIM28-202ENST00000341753 CHEK1O14757 476 aa17.94■□□□□ 0.46
TRIM28-202ENST00000341753 GLRXP35754 106 aa17.94■□□□□ 0.46
TRIM28-202ENST00000341753 CIARTQ8N365 385 aaPredicted RBP17.94■□□□□ 0.46
TRIM28-202ENST00000341753 DAZAP1Q96EP5 407 aaKnown RBP17.94■□□□□ 0.46
TRIM28-202ENST00000341753 NCOR1P1Q9H4R4 102 aa17.94■□□□□ 0.46
TRIM28-202ENST00000341753 SELENOKQ9Y6D0 94 aa17.94■□□□□ 0.46
TRIM28-202ENST00000341753 HSBP1L1C9JCN9 74 aa17.93■□□□□ 0.46
TRIM28-202ENST00000341753 SLC25A17O43808 307 aa17.93■□□□□ 0.46
TRIM28-202ENST00000341753 CCL8P80075 99 aa17.93■□□□□ 0.46
TRIM28-202ENST00000341753 TCF15Q12870 199 aa17.93■□□□□ 0.46
TRIM28-202ENST00000341753 TMUB1Q9BVT8 246 aa17.93■□□□□ 0.46
TRIM28-202ENST00000341753 PRSS22Q9GZN4 317 aa17.93■□□□□ 0.46
TRIM28-202ENST00000341753 TMEM191AQ9H0A3 160 aa17.93■□□□□ 0.46
TRIM28-202ENST00000341753 SH3BGRL2Q9UJC5 107 aa17.93■□□□□ 0.46
TRIM28-202ENST00000341753 PKDREJQ9NTG1 2253 aa17.93■□□□□ 0.46
TRIM28-202ENST00000341753 IGHV3-72A0A0B4J1Y9 119 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 hADV38S2A0JD32 116 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 CHCHD1Q96BP2 118 aaKnown RBP17.92■□□□□ 0.46
TRIM28-202ENST00000341753 PERPQ96FX8 193 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 CEP295Q9C0D2 2601 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 A0A1W2PPI3 338 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 VPS25Q9BRG1 176 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 KLF12Q9Y4X4 402 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 OR5AN1Q8NGI8 311 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 OR10X1Q8NGY0 326 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 Q9H3A6 140 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 CST9LQ9H4G1 147 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 SCRT2Q9NQ03 307 aa17.92■□□□□ 0.46
TRIM28-202ENST00000341753 C19orf71A6NCJ1 209 aa17.91■□□□□ 0.46
TRIM28-202ENST00000341753 RBPMS2Q6ZRY4 209 aaKnown RBP17.91■□□□□ 0.46
TRIM28-202ENST00000341753 THAP8Q8NA92 274 aa17.91■□□□□ 0.46
TRIM28-202ENST00000341753 TMEM167AQ8TBQ9 72 aa17.91■□□□□ 0.46
TRIM28-202ENST00000341753 MAP1LC3CQ9BXW4 147 aa17.91■□□□□ 0.46
TRIM28-202ENST00000341753 DEFB125Q8N687 156 aa17.91■□□□□ 0.46
TRIM28-202ENST00000341753 LTAP01374 205 aa17.9■□□□□ 0.46
TRIM28-202ENST00000341753 TCRAP04437 139 aa17.9■□□□□ 0.46
TRIM28-202ENST00000341753 SUB1P53999 127 aaKnown RBP eCLIP17.9■□□□□ 0.463e-7■■■□□ 15.1
TRIM28-202ENST00000341753 TCTAP57738 103 aa17.9■□□□□ 0.46
TRIM28-202ENST00000341753 H1FXQ92522 213 aaKnown RBP17.9■□□□□ 0.46
TRIM28-202ENST00000341753 LINC00574Q9H8X3 128 aa17.9■□□□□ 0.46
TRIM28-202ENST00000341753 GATA4P43694 442 aa17.9■□□□□ 0.46
TRIM28-202ENST00000341753 RHOGP84095 191 aa17.9■□□□□ 0.46
TRIM28-202ENST00000341753 TEX45Q8NA69 505 aa17.9■□□□□ 0.46
TRIM28-202ENST00000341753 IGLV3-9A0A075B6K5 115 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 FCN3O75636 299 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 COL8A1P27658 744 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 TIMM23BQ5SRD1 257 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 FAM162BQ5T6X4 162 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 C1orf185Q5T7R7 199 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 Q6ZS92 163 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 OR4C13Q8NGP0 309 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 LINC00312Q9Y6C7 94 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 ENSAO43768 121 aaKnown RBP17.89■□□□□ 0.45
TRIM28-202ENST00000341753 PSG9Q00887 426 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 PRNTQ86SH4 94 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 C5orf17Q8NAS9 161 aa17.89■□□□□ 0.45
TRIM28-202ENST00000341753 IGLV2-23P01705 113 aa17.88■□□□□ 0.45
TRIM28-202ENST00000341753 LIPFP07098 398 aa17.88■□□□□ 0.45
TRIM28-202ENST00000341753 PRB3Q04118 309 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-202ENST00000341753 EXOC3-AS1Q8N2X6 119 aa17.88■□□□□ 0.45
TRIM28-202ENST00000341753 HTR1DP28221 377 aa17.88■□□□□ 0.45
TRIM28-202ENST00000341753 OCIAD2Q56VL3 154 aa17.88■□□□□ 0.45
TRIM28-202ENST00000341753 ARL6IP6Q8N6S5 226 aa17.88■□□□□ 0.45
TRIM28-202ENST00000341753 FMC1Q96HJ9 113 aa17.88■□□□□ 0.45
TRIM28-202ENST00000341753 C1RLQ9NZP8 487 aa17.88■□□□□ 0.45
TRIM28-202ENST00000341753 TRAV8-6A0A0B4J262 113 aa17.87■□□□□ 0.45
TRIM28-202ENST00000341753 GP9P14770 177 aa17.87■□□□□ 0.45
TRIM28-202ENST00000341753 TMEM200BQ69YZ2 307 aa17.87■□□□□ 0.45
TRIM28-202ENST00000341753 NCR2O95944 276 aa17.87■□□□□ 0.45
TRIM28-202ENST00000341753 S100A7P31151 101 aa17.87■□□□□ 0.45
TRIM28-202ENST00000341753 C12orf54Q6X4T0 127 aa17.87■□□□□ 0.45
TRIM28-202ENST00000341753 PRSS33Q8NF86 280 aa17.87■□□□□ 0.45
TRIM28-202ENST00000341753 ARF6P62330 175 aa17.86■□□□□ 0.45
TRIM28-202ENST00000341753 GOLT1AQ6ZVE7 132 aa17.86■□□□□ 0.45
TRIM28-202ENST00000341753 STXBP6Q8NFX7 210 aa17.86■□□□□ 0.45
TRIM28-202ENST00000341753 TPPP3Q9BW30 176 aa17.86■□□□□ 0.45
TRIM28-202ENST00000341753 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.86■□□□□ 0.45
TRIM28-202ENST00000341753 DLX1P56177 255 aa17.86■□□□□ 0.45
TRIM28-202ENST00000341753 IGFL3Q6UXB1 125 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 OR5AL1P0C617 328 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 Q86TA4 180 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 FAM169BQ8N8A8 192 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 VSTM2AQ8TAG5 236 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 NDFIP1Q9BT67 221 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 ZNF492Q9P255 531 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 APOHP02749 345 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-202ENST00000341753 ARMS2P0C7Q2 107 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 UQCRFS1P47985 274 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 132.1 ms