RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 IGKV1D-17A0A075B6S4 117 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 LY6G6EA0A0G2JKS1 128 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 U3KQA8 63 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 TRAV41A0A0B4J266 112 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 NAA38Q9BRA0 125 aaKnown RBP8.36□□□□□ -1.07
CHD3-201ENST00000330494 EPDR1Q9UM22 224 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 NUP210Q8TEM1 1887 aaPredicted RBP8.36□□□□□ -1.07
CHD3-201ENST00000330494 C2orf16Q68DN1 1984 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 TRAV8-4A0A0B4J246 113 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 LINC00473A8K010 186 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 SUPT4H1P63272 117 aaKnown RBP8.36□□□□□ -1.07
CHD3-201ENST00000330494 PRDM13Q9H4Q3 707 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 MBNL3Q9NUK0 354 aaKnown RBP8.36□□□□□ -1.07
CHD3-201ENST00000330494 DENND4AQ7Z401 1863 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 VENTXO95231 258 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 NAPSAO96009 420 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 RPL35AP18077 110 aaKnown RBP8.35□□□□□ -1.07
CHD3-201ENST00000330494 LEPP41159 167 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 MLANAQ16655 118 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 OR5AN1Q8NGI8 311 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 RPUSD1Q9UJJ7 312 aaKnown RBP8.35□□□□□ -1.07
CHD3-201ENST00000330494 TRAV12-3A0A0B4J271 114 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 ZFAND6Q6FIF0 208 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 SIGLEC15Q6ZMC9 328 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 A0A087WWC5 75 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 SRSF7Q16629 238 aaKnown RBP eCLIP8.35□□□□□ -1.07
CHD3-201ENST00000330494 Q6P435 159 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 ZNF524Q96C55 264 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 SAP30O75446 220 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 OR10J3Q5JRS4 329 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 Q6ZS92 163 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 OCC1Q8TAD7 63 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BLQ99880 126 aa8.35□□□□□ -1.07
CHD3-201ENST00000330494 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.35□□□□□ -1.075e-6■■■□□ 16.7
CHD3-201ENST00000330494 IZUMO1RA6ND01 250 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 MBD3L4A6NDZ8 208 aaPredicted RBP8.34□□□□□ -1.07
CHD3-201ENST00000330494 MBD3L3A6NE82 208 aaPredicted RBP8.34□□□□□ -1.07
CHD3-201ENST00000330494 MBD3L5A6NJ08 208 aaPredicted RBP8.34□□□□□ -1.07
CHD3-201ENST00000330494 MBD3L2Q8NHZ7 208 aaPredicted RBP8.34□□□□□ -1.07
CHD3-201ENST00000330494 COQ2Q96H96 371 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 MGST2Q99735 147 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 PSG8Q9UQ74 426 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 GTF3C1Q12789 2109 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 IGHV3-64A0A075B6Q5 118 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 RNF223E7ERA6 249 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 PSG1P11464 419 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 TDGF1P13385 188 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 PVRIGQ6DKI7 326 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 LRTM2Q8N967 370 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 TMEM170AQ8WVE7 144 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 C2orf88Q9BSF0 95 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 FABP5P3A8MUU1 101 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 HEPN1Q6WQI6 88 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 FBLN5Q9UBX5 448 aa8.34□□□□□ -1.07
CHD3-201ENST00000330494 BUB1B-PAK6H3BSN5 160 aa8.34□□□□□ -1.08
CHD3-201ENST00000330494 DEFB121Q5J5C9 76 aa8.34□□□□□ -1.08
CHD3-201ENST00000330494 TREML4Q6UXN2 200 aa8.34□□□□□ -1.08
CHD3-201ENST00000330494 PLXNB3Q9ULL4 1909 aa8.34□□□□□ -1.08
CHD3-201ENST00000330494 IGKV1-5P01602 117 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 ID3Q02535 119 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 DUX4L9Q6RFH8 374 aaPredicted RBP8.33□□□□□ -1.08
CHD3-201ENST00000330494 SLC25A48Q6ZT89 311 aaKnown RBP8.33□□□□□ -1.08
CHD3-201ENST00000330494 H0YJW9 148 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 GTSCR1Q86UQ5 136 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 COPS9Q8WXC6 57 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 HIST3H2BBQ8N257 126 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 GGTLC1Q9BX51 225 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 CYSLTR1Q9Y271 337 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 ESDP10768 282 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 EP400Q96L91 3159 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 K7ENP7 123 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 ZNF688P0C7X2 276 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 CNTFRP26992 372 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 SAMD5Q5TGI4 173 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 ORMDL3Q8N138 153 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 OR2K2Q8NGT1 345 aa8.33□□□□□ -1.08
CHD3-201ENST00000330494 H7C1H1 209 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 SP5Q6BEB4 398 aaPredicted RBP8.32□□□□□ -1.08
CHD3-201ENST00000330494 CIARTQ8N365 385 aaPredicted RBP8.32□□□□□ -1.08
CHD3-201ENST00000330494 MRPS16Q9Y3D3 137 aaKnown RBP8.32□□□□□ -1.08
CHD3-201ENST00000330494 ARFGEF3Q5TH69 2177 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 IGHV3-53P01767 116 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 IGKV1-16P04430 117 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 GAGE2BQ13066 116 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 GAGE2EQ4V326 116 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 LCNL1Q6ZST4 164 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 ORAOV1Q8WV07 137 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 SLC25A39Q9BZJ4 359 aaPredicted RBP8.32□□□□□ -1.08
CHD3-201ENST00000330494 SEPSECSQ9HD40 501 aaKnown RBP8.32□□□□□ -1.08
CHD3-201ENST00000330494 GAGE2DQ9UEU5 116 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 GPR179Q6PRD1 2367 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 CACNG7P62955 275 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 ZNF415Q09FC8 603 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 FAM166AQ6J272 317 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 Q8TAT8 98 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 TRAV9-2A0A087WT02 112 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 PGPEP1Q9NXJ5 209 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 MSRB2Q9Y3D2 182 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 TRGV4A0A0C4DH28 118 aa8.32□□□□□ -1.08
CHD3-201ENST00000330494 SAA4P35542 130 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms