RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ADAT1Q9BUB4 502 aaKnown RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 GNB1LQ9BYB4 327 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 DAZ1Q9NQZ3 744 aaKnown RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 SLC2A9Q9NRM0 540 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF586Q9NXT0 402 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF492Q9P255 531 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 COMMD3Q9UBI1 195 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 LINC00527Q9UJ94 153 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 TGP01266 2768 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 ZFC3H1O60293 1989 aaKnown RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 AKAP9Q99996 3911 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 DSCAML1Q8TD84 2053 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 TGIF2-C20orf24A0A0A6YYL0 155 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 IGHV3-21A0A0B4J1V1 117 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 PNMA8CA0A1B0GUJ8 204 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 EXOC1LA0A1B0GW35 172 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 OR5H14A6NHG9 310 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 B4DEV8 164 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 IGLL5B9A064 214 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 C4orf51C9J302 202 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 C5orf58C9J3I9 102 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 F6UZH7 168 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-201ENST00000326004 K7ERS5 55 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 CCL25O15444 150 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 KLRC4O43908 158 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 GGCTO75223 188 aaKnown RBP1.64□□□□□ -2.15
HMGB1-201ENST00000326004 PIAS1O75925 651 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 IFNA17P01571 189 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 OR12D1P0DN82 309 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 PTHLHP12272 177 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 NFYBP25208 207 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 CD34P28906 385 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 ETV6P41212 452 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 NDUFA6P56556 154 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 LINC00313P59037 77 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 GABARAPL2P60520 117 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 RPS24P62847 133 aaKnown RBP1.64□□□□□ -2.15
HMGB1-201ENST00000326004 BTG2P78543 158 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 FABP5Q01469 135 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 EMX2Q04743 252 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 OR2F1Q13607 317 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 JOSD1Q15040 202 aaPredicted RBP1.64□□□□□ -2.15
HMGB1-201ENST00000326004 EBPQ15125 230 aaKnown RBP1.64□□□□□ -2.15
HMGB1-201ENST00000326004 MMDQ15546 238 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 BATFQ16520 125 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 AKR1C8PQ5T2L2 129 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 SFXN4Q6P4A7 337 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 SMARCD3Q6STE5 483 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 ATP5L2Q7Z4Y8 100 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 LYG2Q86SG7 212 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 PDZD9Q8IXQ8 264 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 SVBPQ8N300 66 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 KRTCAP2Q8N6L1 136 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 OR4K15Q8NH41 348 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 MFSD8Q8NHS3 518 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 TMEM203Q969S6 136 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 CMBLQ96DG6 245 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 TVP23CQ96ET8 276 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 PHB2Q99623 299 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 B9D2Q9BPU9 175 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 CCDC32Q9BV29 185 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 MED28Q9H204 178 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 TXNIPQ9H3M7 391 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 RNF122Q9H9V4 155 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 SMCO4Q9NRQ5 59 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 RASL12Q9NYN1 266 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 OR52A1Q9UKL2 312 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 ZFP30Q9Y2G7 519 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 MYH3P11055 1940 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 ACANP16112 2415 aa1.64□□□□□ -2.15
HMGB1-201ENST00000326004 EML5Q05BV3 1969 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF638Q14966 1978 aaKnown RBP1.63□□□□□ -2.15
HMGB1-201ENST00000326004 TRAV8-1A0A0A6YYK1 113 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 IGKV1-12A0A0C4DH73 117 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 A0A0D9SFI3 127 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 TMEM218A2RU14 115 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 C5orf49A4QMS7 147 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 A8MWP4 228 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 INMT-MINDY4F8WBC2 141 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 K7EQS6 105 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 BHLHE40O14503 412 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 UBFD1O14562 309 aaKnown RBP1.63□□□□□ -2.15
HMGB1-201ENST00000326004 MRASO14807 208 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 PLA2G10O15496 165 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 OR2T1O43869 369 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 ORC5O43913 435 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 GNG7O60262 68 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 CNIH1O95406 144 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 FSTL3O95633 263 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 PDYNP01213 254 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 IGKV1D-12P01611 117 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 C1QCP02747 245 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 MT-ND4LP03901 98 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 TRGV3P03979 118 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 FGF7P21781 194 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 CRHBPP24387 322 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 COL8A2P25067 703 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 SDC4P31431 198 aa1.63□□□□□ -2.15
HMGB1-201ENST00000326004 SULT1A1P50225 295 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms