RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SNRPD3P62318 126 aaKnown RBP9.48□□□□□ -0.89
VPS39-201ENST00000318006 TMEM155Q4W5P6 130 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 PNRC2Q9NPJ4 139 aaKnown RBP9.48□□□□□ -0.89
VPS39-201ENST00000318006 DPM3Q9P2X0 92 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 CD300EQ496F6 205 aaPredicted RBP9.48□□□□□ -0.89
VPS39-201ENST00000318006 RTN4RL2Q86UN3 420 aa9.48□□□□□ -0.89
VPS39-201ENST00000318006 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.47□□□□□ -0.89
VPS39-201ENST00000318006 IGHV1-18A0A0C4DH31 117 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 PAX1P15863 534 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 CNTFRP26992 372 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 LAGE3Q14657 143 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 SLC50A1Q9BRV3 221 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 TANC1Q9C0D5 1861 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 IGKV1-27A0A075B6S5 117 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 IGHV3-49A0A0A0MS15 119 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 MMP23AO75900 390 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 IGHV3-23P01764 117 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 Q6ZWC4 215 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 C8orf46Q8TAG6 207 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 NEU4Q8WWR8 484 aaPredicted RBP9.47□□□□□ -0.89
VPS39-201ENST00000318006 DOCK8Q8NF50 2099 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 IGHV3-66A0A0C4DH42 116 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 CHAC1Q9BUX1 264 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 RBMY1BA6NDE4 496 aaKnown RBP9.47□□□□□ -0.89
VPS39-201ENST00000318006 RBMY1EA6NEQ0 496 aaKnown RBP9.47□□□□□ -0.89
VPS39-201ENST00000318006 E9PQ18 207 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 RBMY1DP0C7P1 496 aaKnown RBP9.47□□□□□ -0.89
VPS39-201ENST00000318006 RBMY1A1P0DJD3 496 aaKnown RBP9.47□□□□□ -0.89
VPS39-201ENST00000318006 RBMY1CP0DJD4 496 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 FHL1Q13642 323 aa9.47□□□□□ -0.89
VPS39-201ENST00000318006 IGKV3OR2-268A0A0C4DH90 116 aa9.46□□□□□ -0.89
VPS39-201ENST00000318006 FOXF2Q12947 444 aa9.46□□□□□ -0.89
VPS39-201ENST00000318006 TCRAP04437 139 aa9.46□□□□□ -0.9
VPS39-201ENST00000318006 C11orf68Q9H3H3 251 aaKnown RBP9.46□□□□□ -0.9
VPS39-201ENST00000318006 NBASA2RRP1 2371 aa9.46□□□□□ -0.9
VPS39-201ENST00000318006 NOTCH4Q99466 2003 aa9.46□□□□□ -0.9
VPS39-201ENST00000318006 IGHV3OR16-12A0A075B7B8 117 aa9.46□□□□□ -0.9
VPS39-201ENST00000318006 C9orf118A6NHY6 69 aa9.46□□□□□ -0.9
VPS39-201ENST00000318006 K7EP13 123 aa9.46□□□□□ -0.9
VPS39-201ENST00000318006 C18orf32Q8TCD1 76 aa9.46□□□□□ -0.9
VPS39-201ENST00000318006 SLC25A15Q9Y619 301 aa9.46□□□□□ -0.9
VPS39-201ENST00000318006 TMEM238C9JI98 176 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 NCR2O95944 276 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 YPEL3P61236 119 aaPredicted RBP9.45□□□□□ -0.9
VPS39-201ENST00000318006 PRR31Q5SQ13 230 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 ZC2HC1BQ5TFG8 222 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 RNASE6Q93091 150 aaKnown RBP9.45□□□□□ -0.9
VPS39-201ENST00000318006 TMEM101Q96IK0 257 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 PGPEP1Q9NXJ5 209 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 RNF144BQ7Z419 303 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 ARPC1AQ92747 370 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 PLSCR4Q9NRQ2 329 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 POLEQ07864 2286 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 M0R2P5 195 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 IGKV3-20P01619 116 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 CCL3L1P16619 93 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 PPIFP30405 207 aaKnown RBP9.45□□□□□ -0.9
VPS39-201ENST00000318006 B3GALT5-AS1P59052 145 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 PLAURQ03405 335 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 Q6ZS49 121 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 MDS2Q8NDY4 140 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 UTRNP46939 3433 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 TP53BP1Q12888 1972 aaPredicted RBP9.45□□□□□ -0.9
VPS39-201ENST00000318006 C5orf63A6NC05 138 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 IL18BPO95998 194 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 ZNF138P52744 262 aa9.45□□□□□ -0.9
VPS39-201ENST00000318006 MCRIP2Q9BUT9 160 aaKnown RBP9.45□□□□□ -0.9
VPS39-201ENST00000318006 TSSC4Q9Y5U2 329 aaPredicted RBP9.45□□□□□ -0.9
VPS39-201ENST00000318006 NTF4P34130 210 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 RHOGP84095 191 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 TRBV6-6A0A0A6YYG2 114 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 A0A0G2JRQ6 117 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 TFF1P04155 84 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 LYZL1Q6UWQ5 148 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 RSPO3Q9BXY4 272 aaPredicted RBP9.44□□□□□ -0.9
VPS39-201ENST00000318006 CDKN1BP46527 198 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 LY6EQ16553 131 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 TEX43Q6ZNM6 134 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 IGHV3OR16-8A0A075B7F1 116 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.44□□□□□ -0.9
VPS39-201ENST00000318006 IGKV1D-33P01593 117 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 IGKV1-33P01594 117 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 RNASE4P34096 147 aaKnown RBP9.44□□□□□ -0.9
VPS39-201ENST00000318006 C2orf82Q6UX34 121 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 SPACA3Q8IXA5 215 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 ZCCHC24Q8N2G6 241 aaKnown RBP9.44□□□□□ -0.9
VPS39-201ENST00000318006 MPDZO75970 2070 aa9.44□□□□□ -0.9
VPS39-201ENST00000318006 TRAV21A0A0B4J279 112 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 TNFRSF6BO95407 300 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 TMEM42Q69YG0 159 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 CCL19Q99731 98 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 SLC25A39Q9BZJ4 359 aaPredicted RBP9.43□□□□□ -0.9
VPS39-201ENST00000318006 C15orf62A8K5M9 175 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 NPIPB5A8MRT5 1133 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 K7EP34 96 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 Q6ZRM9 215 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 STPG4Q8N801 248 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 ATP6V0BQ99437 205 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 E9PLN8 166 aa9.43□□□□□ -0.9
VPS39-201ENST00000318006 TRGV3P03979 118 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms