RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 HIGD2BQ4VC39 106 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 IL17RELQ6ZVW7 336 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 SRXN1Q9BYN0 137 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 SLIRPQ9GZT3 109 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 R3HDMLQ9H3Y0 253 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 NUMA1Q14980 2115 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 ATP5J2P56134 94 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 MRM2Q9UI43 246 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 A0A096LPF7 62 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 A0A1B0GTI1 187 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 LILRA1O75019 489 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 DSCR4P56555 118 aaPredicted RBP6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 CCL8P80075 99 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 SPEM1Q8N4L4 309 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 ZNF703Q9H7S9 590 aaPredicted RBP6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 IGLL5B9A064 214 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 NTN3O00634 580 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 DEFB115Q30KQ5 88 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 ASPHD1Q5U4P2 390 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 TMEM222Q9H0R3 208 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 DKK2Q9UBU2 259 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 MYH9P35579 1960 aaKnown RBP6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 LAMB2P55268 1798 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 CACNA1SQ13698 1873 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 SCTP09683 121 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 TMEM54Q969K7 222 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 ESM1Q9NQ30 184 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 DKK4Q9UBT3 224 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 IGHV3-16A0A0C4DH30 117 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 PSPHP1O15172 72 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 TCTN3Q6NUS6 607 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 ATRAIDQ6UW56 229 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 MPC1Q9Y5U8 109 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 ZNF142P52746 1687 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 IGKV2-40A0A087WW87 121 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 LYPD3O95274 346 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 IGKV2D-40P01614 121 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 IGFBP3P17936 291 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 IFITM2Q01629 132 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 FOXI1Q12951 378 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 C8orf86Q6ZUL3 223 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 C14orf178Q8N769 122 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 FGFBP3Q8TAT2 258 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 ZNF638Q14966 1978 aaKnown RBP6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 FBLIM1Q8WUP2 373 aa6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 MRPL35Q9NZE8 188 aaKnown RBP6.3□□□□□ -1.4
LIMCH1-201ENST00000313860 ZNFX1Q9P2E3 1918 aaKnown RBP6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 A0A1B0GW64 132 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 K7EMI3 77 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 PGLYRP1O75594 196 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 IGF1P05019 195 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 TIRAPP58753 221 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 LMO3Q8TAP4 145 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 C18orf12Q96KH6 178 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 LAIR2Q6ISS4 152 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 TMEM61Q8N0U2 210 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 C8orf49Q96NF6 230 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 TNS2Q63HR2 1409 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 NUPR2A6NF83 97 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 C8orf82Q6P1X6 216 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 ZNF503Q96F45 646 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 MESP1Q9BRJ9 268 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 LY96Q9Y6Y9 160 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 UBR2Q8IWV8 1755 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 IGKV6D-41A0A0C4DH26 115 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 NCR3O14931 201 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 SAA2P0DJI9 122 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 TRPT1Q86TN4 253 aaKnown RBP6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 GPHB5Q86YW7 130 aa6.29□□□□□ -1.4
LIMCH1-201ENST00000313860 SAA2-SAA4A0A096LPE2 208 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 IGHV3-38A0A0C4DH36 116 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 H0YIZ8 118 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 LYZL1Q6UWQ5 148 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 Q6ZVH6 145 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 MRPS18CQ9Y3D5 142 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 TOGARAM1Q9Y4F4 1720 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 IGHV2-26A0A0B4J1V2 119 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 CD27P26842 260 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 IGKV1OR2-108A0A075B7D4 117 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 HLA-DMBP28068 263 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 SEM1Q6ZVN7 128 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 CFHR4Q92496 578 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 KLF2Q9Y5W3 355 aaPredicted RBP6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 J3QW42 95 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 EDN2P20800 178 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 SPAG11BQ08648 103 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 IL15RAQ13261 267 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 PSG8Q9UQ74 426 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 TP53TG1Q9Y2A0 90 aa6.28□□□□□ -1.4
LIMCH1-201ENST00000313860 IGHV1-69DA0A0B4J2H0 117 aa6.27□□□□□ -1.4
LIMCH1-201ENST00000313860 IGHV1-69P01742 117 aa6.27□□□□□ -1.4
LIMCH1-201ENST00000313860 DUSP14O95147 198 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 SDIM1Q6ZPB5 146 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 Q8N9L7 120 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 RNF166Q96A37 237 aaPredicted RBP6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 C20orf144Q9BQM9 153 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 TM2D2Q9BX73 214 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 MAST2Q6P0Q8 1798 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 PCM1Q15154 2024 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 KIR2DL5BA0A0G2JN68 375 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms