RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SEC22CQ9BRL7 303 aa11.91□□□□□ -0.5
LSM1-201ENST00000311351 RCL1Q9Y2P8 373 aaKnown RBP11.91□□□□□ -0.5
LSM1-201ENST00000311351 SMCO3A2RU48 225 aa11.9□□□□□ -0.5
LSM1-201ENST00000311351 SNRPGP15A8MWD9 76 aa11.9□□□□□ -0.5
LSM1-201ENST00000311351 PAX9P55771 341 aa11.9□□□□□ -0.5
LSM1-201ENST00000311351 DEFA1P59665 94 aa11.9□□□□□ -0.5
LSM1-201ENST00000311351 DEFA3P59666 94 aa11.9□□□□□ -0.5
LSM1-201ENST00000311351 RAB40CQ96S21 281 aa11.9□□□□□ -0.5
LSM1-201ENST00000311351 GSKIPQ9P0R6 139 aa11.9□□□□□ -0.5
LSM1-201ENST00000311351 TBC1D24Q9ULP9 559 aa11.9□□□□□ -0.5
LSM1-201ENST00000311351 PMS2P5A8MQ11 134 aa11.89□□□□□ -0.51
LSM1-201ENST00000311351 DEFB4AO15263 64 aa11.89□□□□□ -0.51
LSM1-201ENST00000311351 H2AFB2P0C5Z0 115 aa11.89□□□□□ -0.51
LSM1-201ENST00000311351 METTL15P1P0C7V9 234 aa11.89□□□□□ -0.51
LSM1-201ENST00000311351 SPP1P10451 314 aa11.89□□□□□ -0.51
LSM1-201ENST00000311351 DEFB1P60022 68 aa11.89□□□□□ -0.51
LSM1-201ENST00000311351 SNRPD3P62318 126 aaKnown RBP11.89□□□□□ -0.51
LSM1-201ENST00000311351 SMIM8Q96KF7 97 aa11.89□□□□□ -0.51
LSM1-201ENST00000311351 PFDN2Q9UHV9 154 aa11.89□□□□□ -0.51
LSM1-201ENST00000311351 SOCS3O14543 225 aa11.88□□□□□ -0.51
LSM1-201ENST00000311351 JTBO76095 146 aa11.88□□□□□ -0.51
LSM1-201ENST00000311351 RRAS2P62070 204 aaPredicted RBP11.88□□□□□ -0.51
LSM1-201ENST00000311351 MORN3Q6PF18 240 aaPredicted RBP11.88□□□□□ -0.51
LSM1-201ENST00000311351 TMEM14EPQ6UXP3 125 aa11.88□□□□□ -0.51
LSM1-201ENST00000311351 TMEM217Q8N7C4 229 aa11.88□□□□□ -0.51
LSM1-201ENST00000311351 BPIFCQ8NFQ6 507 aa11.88□□□□□ -0.51
LSM1-201ENST00000311351 CLEC5AQ9NY25 188 aa11.88□□□□□ -0.51
LSM1-201ENST00000311351 FBXL17Q9UF56 701 aa11.88□□□□□ -0.51
LSM1-201ENST00000311351 MBPP02686 304 aaPredicted RBP11.87□□□□□ -0.51
LSM1-201ENST00000311351 ATF4P18848 351 aaPredicted RBP11.87□□□□□ -0.51
LSM1-201ENST00000311351 ORM2P19652 201 aa11.87□□□□□ -0.51
LSM1-201ENST00000311351 C1orf194Q5T5A4 169 aa11.87□□□□□ -0.51
LSM1-201ENST00000311351 GDF5OSQ5U4N7 250 aa11.87□□□□□ -0.51
LSM1-201ENST00000311351 TMEM144Q7Z5S9 345 aa11.87□□□□□ -0.51
LSM1-201ENST00000311351 OR8I2Q8N0Y5 310 aa11.87□□□□□ -0.51
LSM1-201ENST00000311351 ZNF431Q8TF32 576 aaPredicted RBP11.87□□□□□ -0.51
LSM1-201ENST00000311351 SLC25A32Q9H2D1 315 aa11.87□□□□□ -0.51
LSM1-201ENST00000311351 C11orf68Q9H3H3 251 aaKnown RBP11.87□□□□□ -0.51
LSM1-201ENST00000311351 SLC25A22Q9H936 323 aa11.87□□□□□ -0.51
LSM1-201ENST00000311351 SEPSECSQ9HD40 501 aaKnown RBP11.87□□□□□ -0.51
LSM1-201ENST00000311351 DOK5Q9P104 306 aa11.87□□□□□ -0.51
LSM1-201ENST00000311351 NUPR2A6NF83 97 aa11.86□□□□□ -0.51
LSM1-201ENST00000311351 FAM25EA8MYX2 175 aa11.86□□□□□ -0.51
LSM1-201ENST00000311351 TSC22D2O75157 780 aa11.86□□□□□ -0.51
LSM1-201ENST00000311351 DLK1P80370 383 aa11.86□□□□□ -0.51
LSM1-201ENST00000311351 CYP2G1PQ6ZSU1 146 aa11.86□□□□□ -0.51
LSM1-201ENST00000311351 OR1B1Q8NGR6 318 aa11.86□□□□□ -0.51
LSM1-201ENST00000311351 LINC00052Q96N35 136 aa11.86□□□□□ -0.51
LSM1-201ENST00000311351 GPN1Q9HCN4 374 aaPredicted RBP11.86□□□□□ -0.51
LSM1-201ENST00000311351 C7orf66A4D0T2 115 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 ZNF98A6NK75 572 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 H3BMM0 161 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 CFDP00746 253 aaPredicted RBP11.85□□□□□ -0.51
LSM1-201ENST00000311351 HLA-DRB4P13762 266 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 NANOS2P60321 138 aaKnown RBP11.85□□□□□ -0.51
LSM1-201ENST00000311351 ARL16Q0P5N6 197 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 Q8NAQ8 132 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 TMEM147Q9BVK8 224 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 SCRT1Q9BWW7 348 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 SLC45A2Q9UMX9 530 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 LSM5Q9Y4Y9 91 aaKnown RBP11.85□□□□□ -0.51
LSM1-201ENST00000311351 HLA-DRB4X5D2U9 266 aa11.85□□□□□ -0.51
LSM1-201ENST00000311351 IGHV4-28A0A0C4DH34 117 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 C5orf51A6NDU8 294 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 IGKV3-20P01619 116 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 IL5P05113 134 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 PSMB3P49720 205 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 TAS2R30P59541 319 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 TMEM41BQ5BJD5 291 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 CEMP1Q6PRD7 247 aaPredicted RBP11.84□□□□□ -0.51
LSM1-201ENST00000311351 C12orf45Q8N5I9 185 aaPredicted RBP11.84□□□□□ -0.51
LSM1-201ENST00000311351 CSNK1G2-AS1Q8NCQ2 148 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 OR10P1Q8NGE3 313 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 C17orf77Q96MU5 243 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 XCL2Q9UBD3 114 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 MGAT4CQ9UBM8 478 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 X6R8D5 127 aa11.84□□□□□ -0.51
LSM1-201ENST00000311351 ZNF705EA8MWA4 302 aaPredicted RBP11.83□□□□□ -0.52
LSM1-201ENST00000311351 H3BRN7 92 aa11.83□□□□□ -0.52
LSM1-201ENST00000311351 K7EPK0 472 aa11.83□□□□□ -0.52
LSM1-201ENST00000311351 PRAF2O60831 178 aa11.83□□□□□ -0.52
LSM1-201ENST00000311351 LINC00869P0C866 280 aa11.83□□□□□ -0.52
LSM1-201ENST00000311351 ID1P41134 155 aa11.83□□□□□ -0.52
LSM1-201ENST00000311351 GALR1P47211 349 aa11.83□□□□□ -0.52
LSM1-201ENST00000311351 SLC38A11Q08AI6 406 aa11.83□□□□□ -0.52
LSM1-201ENST00000311351 C11orf45Q8TAV5 145 aa11.83□□□□□ -0.52
LSM1-201ENST00000311351 PHLDA1Q8WV24 401 aaPredicted RBP11.83□□□□□ -0.52
LSM1-201ENST00000311351 F6UB75 175 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 L7N2F9 121 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 ISLRO14498 428 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 RBMY1A1P0DJD3 496 aaKnown RBP11.82□□□□□ -0.52
LSM1-201ENST00000311351 RBMY1CP0DJD4 496 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 FXYD7P58549 80 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 VAMP2P63027 116 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 IFITM3Q01628 133 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 RBMY1FQ15415 496 aaKnown RBP11.82□□□□□ -0.52
LSM1-201ENST00000311351 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 NRARPQ7Z6K4 114 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 LINC00476Q8WZB0 136 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 C20orf173Q96LM9 149 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 930.4 ms