RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 VOPP1Q96AW1 172 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 TIMM23O14925 209 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 CSRP2Q16527 193 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 PSG3Q16557 428 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 LIME1Q9H400 295 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 TSC2P49815 1807 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 IGHV3OR16-10A0A075B7F0 116 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 IGKV2-40A0A087WW87 121 aaPredicted RBP10.52□□□□□ -0.73
COL3A1-201ENST00000304636 IGKV2D-40P01614 121 aaPredicted RBP10.52□□□□□ -0.73
COL3A1-201ENST00000304636 CD7P09564 240 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 SELLP14151 372 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 RLFQ13129 1914 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 SVILO95425 2214 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 H0YJW9 148 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 ETV2O00321 342 aaPredicted RBP10.51□□□□□ -0.73
COL3A1-201ENST00000304636 IGLC2P0DOY2 106 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 IGLC3P0DOY3 106 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 CNTFRP26992 372 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 PLSCR4Q9NRQ2 329 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 CASP8AP2Q9UKL3 1982 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 RNASE2P10153 161 aaKnown RBP10.51□□□□□ -0.73
COL3A1-201ENST00000304636 RHOGP84095 191 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 Q6ZWC4 215 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 ERG28Q9UKR5 140 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 SMAD7O15105 426 aaKnown RBP10.51□□□□□ -0.73
COL3A1-201ENST00000304636 MLNRO43193 412 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 IL15RAQ13261 267 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 CD300EQ496F6 205 aaPredicted RBP10.51□□□□□ -0.73
COL3A1-201ENST00000304636 DUX3Q96PT4 197 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 RNF5Q99942 180 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 MYOD1P15172 320 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 ZFAND6Q6FIF0 208 aa10.51□□□□□ -0.73
COL3A1-201ENST00000304636 SH2D1AO60880 128 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 OCIAD2Q56VL3 154 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 TMEM200BQ69YZ2 307 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 OVOL1O14753 267 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 ZNF138P52744 262 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 LINC00205P59089 165 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 PTPRDP23468 1912 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 TDGF1P13385 188 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 CKS1BP61024 79 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 GAGE2BQ13066 116 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 GAGE2EQ4V326 116 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 CST9LQ9H4G1 147 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 GAGE2DQ9UEU5 116 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 NPSP0C0P6 89 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 IGHV2-26A0A0B4J1V2 119 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 FAM231BA6NCW3 169 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 MMP23AO75900 390 aa10.5□□□□□ -0.73
COL3A1-201ENST00000304636 CENPVQ7Z7K6 275 aaPredicted RBP10.5□□□□□ -0.73
COL3A1-201ENST00000304636 DLX4Q92988 240 aaPredicted RBP10.5□□□□□ -0.73
COL3A1-201ENST00000304636 ITGB1BP1O14713 200 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 IGHV1-8P0DP01 117 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 PRB3Q04118 309 aaPredicted RBP10.49□□□□□ -0.73
COL3A1-201ENST00000304636 COLCA1Q6ZS62 124 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 Q86TA4 180 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 HS3ST6Q96QI5 342 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 ZNF492Q9P255 531 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 CACNA1DQ01668 2161 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 TRBV7-9A0A0J9YWB2 115 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 ZCCHC24Q8N2G6 241 aaKnown RBP10.49□□□□□ -0.73
COL3A1-201ENST00000304636 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.49□□□□□ -0.73
COL3A1-201ENST00000304636 RBMY1BA6NDE4 496 aaKnown RBP10.49□□□□□ -0.73
COL3A1-201ENST00000304636 RBMY1EA6NEQ0 496 aaKnown RBP10.49□□□□□ -0.73
COL3A1-201ENST00000304636 RBMY1DP0C7P1 496 aaKnown RBP10.49□□□□□ -0.73
COL3A1-201ENST00000304636 RBMY1A1P0DJD3 496 aaKnown RBP10.49□□□□□ -0.73
COL3A1-201ENST00000304636 RBMY1CP0DJD4 496 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 GTSF1LQ9H1H1 148 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 VWA8A3KMH1 1905 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 ATP5J2P56134 94 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 CT83Q5H943 113 aa10.49□□□□□ -0.73
COL3A1-201ENST00000304636 IGKV1D-17A0A075B6S4 117 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 TMEM238C9JI98 176 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 FXYD7P58549 80 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 ARHGEF17Q96PE2 2063 aaPredicted RBP10.48□□□□□ -0.73
COL3A1-201ENST00000304636 CD24P25063 80 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 GLMPQ8WWB7 406 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 LINC00479Q96M42 142 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 COLQQ9Y215 455 aaPredicted RBP10.48□□□□□ -0.73
COL3A1-201ENST00000304636 MDC1Q14676 2089 aaKnown RBP10.48□□□□□ -0.73
COL3A1-201ENST00000304636 IGHV1-3A0A0C4DH29 117 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 Q0VFX4 171 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 CHAC1Q9BUX1 264 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 PGPEP1Q9NXJ5 209 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 ZC2HC1BQ5TFG8 222 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 SIGLEC15Q6ZMC9 328 aa10.48□□□□□ -0.73
COL3A1-201ENST00000304636 TRAV8-1A0A0A6YYK1 113 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.47□□□□□ -0.73
COL3A1-201ENST00000304636 RNASE6Q93091 150 aaKnown RBP10.47□□□□□ -0.73
COL3A1-201ENST00000304636 CYYR1Q96J86 154 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 V9GYV3 84 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 SDK2Q58EX2 2172 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 DPH3Q96FX2 82 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 GAFA1Q96PS6 74 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 SELENOKQ9Y6D0 94 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 TMEM158Q8WZ71 300 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 MCRIP2Q9BUT9 160 aaKnown RBP10.47□□□□□ -0.73
COL3A1-201ENST00000304636 WIPF3A6NGB9 483 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 IGKV1-39P01597 117 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 IGHV3-11P01762 117 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms