RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 AP5S1Q9NUS5 200 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 EPDR1Q9UM22 224 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 ZNF257Q9Y2Q1 563 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 A6NDN8 102 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 TIMM8AO60220 97 aaPredicted RBP10.86□□□□□ -0.67
SKA3-201ENST00000298260 CACNG7P62955 275 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 LINC00305Q7Z4B0 112 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 ATP5L2Q7Z4Y8 100 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 HSPB8Q9UJY1 196 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 ARMS2P0C7Q2 107 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 FAM87AP0C7U9 286 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 RNASE2P10153 161 aaKnown RBP10.85□□□□□ -0.67
SKA3-201ENST00000298260 SVIPQ8NHG7 77 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 CFHR2P36980 270 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 PRSS3P2Q8NHM4 247 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 TTTY12Q9BZ98 90 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 DEFB127Q9H1M4 99 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 A0A096LNJ9 63 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 IQCF6A8MYZ5 107 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 NKX2-8O15522 239 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 CEACAM3P40198 252 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 CD69Q07108 199 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 ADTRPQ96IZ2 230 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 GPR82Q96P67 336 aa10.85□□□□□ -0.67
SKA3-201ENST00000298260 BOKQ9UMX3 212 aaPredicted RBP10.85□□□□□ -0.67
SKA3-201ENST00000298260 TNFSF15O95150 251 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 GCSHP23434 173 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 PRCDQ00LT1 54 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 SH2D6Q7Z4S9 175 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 OR2Z1Q8NG97 314 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 DAZAP1Q96EP5 407 aaKnown RBP10.84□□□□□ -0.67
SKA3-201ENST00000298260 A1L4Q6 167 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 PSG3Q16557 428 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 ADAMTSL5Q6ZMM2 481 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 RBPMS2Q6ZRY4 209 aaKnown RBP10.84□□□□□ -0.67
SKA3-201ENST00000298260 PDPNQ86YL7 162 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 CALYQ9NYX4 217 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 PLCE1Q9P212 2302 aa10.84□□□□□ -0.67
SKA3-201ENST00000298260 COL8A1P27658 744 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 BMI1P35226 326 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 FXYD2P54710 66 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 HSD52Q0P140 79 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 WFDC2Q14508 124 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 SAMD5Q5TGI4 173 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 ABHD17AQ96GS6 310 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 MLST8Q9BVC4 326 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 PRSS22Q9GZN4 317 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 JPT1Q9UK76 154 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 TPRP12270 2363 aaKnown RBP10.83□□□□□ -0.68
SKA3-201ENST00000298260 hADV38S2A0JD32 116 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 LTAP01374 205 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 SAA1P0DJI8 122 aaPredicted RBP10.83□□□□□ -0.68
SKA3-201ENST00000298260 PEAR1Q5VY43 1037 aaPredicted RBP10.83□□□□□ -0.68
SKA3-201ENST00000298260 DEFB108BQ8NET1 73 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 SIGMAR1Q99720 223 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 NDFIP1Q9BT67 221 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 ATMQ13315 3056 aa10.83□□□□□ -0.68
SKA3-201ENST00000298260 FABP2P12104 132 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 IL11RAQ14626 422 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 FA2HQ7L5A8 372 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 PRNTQ86SH4 94 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 RBMXL3Q8N7X1 1067 aaKnown RBP10.82□□□□□ -0.68
SKA3-201ENST00000298260 ZZEF1O43149 2961 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 PIEZO2Q9H5I5 2752 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 UPK2O00526 184 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 SMAD7O15105 426 aaKnown RBP10.82□□□□□ -0.68
SKA3-201ENST00000298260 FSTL3O95633 263 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 RAB9AP51151 201 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 INSL3P51460 131 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 ATP5G2Q06055 141 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 FAM162BQ5T6X4 162 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 BOD1L2Q8IYS8 172 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 CXXC4Q9H2H0 198 aa10.82□□□□□ -0.68
SKA3-201ENST00000298260 SERTM2A0A1B0GWG4 89 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 C19orf71A6NCJ1 209 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 CYC1P08574 325 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 IGHV1-2P23083 117 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 CCDC144NLQ6NUI1 221 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 AMTNQ6UX39 209 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 EXOC3-AS1Q8N2X6 119 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 PRR7Q8TB68 274 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 DKK2Q9UBU2 259 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 IGKV1D-37A0A075B6S9 117 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 TMSB15BA0A087X1C1 80 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 A0A1W2PRD5 423 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 A0A1W2PRF3 423 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 A0A1W2PRM7 423 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 C9orf172C9J069 976 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 C22orf46C9J442 243 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 MYCNOSP40205 109 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 C17orf58Q2M2W7 97 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 DHRS13Q6UX07 377 aa10.81□□□□□ -0.68
SKA3-201ENST00000298260 SRSF12Q8WXF0 261 aaKnown RBP10.81□□□□□ -0.68
SKA3-201ENST00000298260 MRPL32Q9BYC8 188 aaKnown RBP10.81□□□□□ -0.68
SKA3-201ENST00000298260 TRAV26-1A0A087WT03 109 aa10.8□□□□□ -0.68
SKA3-201ENST00000298260 GAGE12HA6NDE8 117 aa10.8□□□□□ -0.68
SKA3-201ENST00000298260 ARPC1AQ92747 370 aa10.8□□□□□ -0.68
SKA3-201ENST00000298260 PRNDQ9UKY0 176 aa10.8□□□□□ -0.68
SKA3-201ENST00000298260 AGRNO00468 2067 aa10.8□□□□□ -0.68
SKA3-201ENST00000298260 IGKV2D-26A0A0A0MRZ7 120 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms